Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00154 ATGGCCACTTCGAAGACGGTAATGTGTTCGCTGAGCCAGTTGCGTCCGCTAACCTGCGCCGCTTCGGCATCGGCATCACGGTTAGTGCCCCACCCACCCGACCTCATAAAGTGGGTAACCAGAGAAGGTGGATTCGTACACCGCGCGGTGAAGATAGCACAGCTCGACTCCTCCAACGGACTGGACCTAGTGGCTAAGGAGGAAATTCCACGTGGCAGTGACCTTATTGTGCTCCCGCACCATCTTCCCCTGCGCTCTACCTCTCTCGAACAAGACCCTCTGCTCCATCACTTGGCGCGCCAAGTCCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAAAGGGCAAAAGTTGGATCGTTTTGGTGGCCATATATAAGCAATCTCCCGGAAACATACACGGTGCCTATTTTCTTTCCTGGGGAGGACATCAAGAACTTGCACTATGCTCCTCTTCTTCATCAGGTAAACAAAAGGTGTCGATTTCTTCTTGATTTTGAGCAAGAAGTCAAGCGTGCTTTGGTAAGTCTTACACCAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTATCATCTAGAGCATTTCGGTTGTATGGTGAAAAGGATCCCAATGGGACACGCATTGACATACCCATGATGCTCCCTCTAATTGATATGTGCAATCACAGTTTCAATCCAAATGCTAGAATTGTTCAAGAGCAAGATACCAGTAGCTCGAAGATGCAAGTGAAGGTTGTAGCTGAGACAGCAATCAAAGAAGACGATCCTCTGTTACTTTGCTATGGCTGTTTAAACAATGATCTTTTCCTTCTTGATTATGGATTTGTGATGCACTCAAACCCTTATGATTGTATTGAGCTCAAATATGACGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGGGTTTCTTCACCATACTTCTCAACACCTGCTCCTTGGCAGGAACTGATCTTATCTCAGCTGAATCTAGCTGGAGAAACTCCAGATTTCAAGGTGAGCTTGGGTGGTCAAGAAACAGTGGAGGGCCGCTTGTTAGCTGCATTAAGAGTACTCCTTTCGAGTAACATGGAAACTGTGCAGAAGTATGACCTGAGCACACTCCAGTCCTTAGATGCTGATGCTCCTCTTGGTGTTGCAAATGACGTAGCTGTATTTCGCACCCTAATTGCTTTGTGTGTCATTGCACTGGGACACTTTCCCACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATCTGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTGTCATCAAAAGAAACAGCAACTGCCGAAGGCTAA 1419 0.4651 MATSKTVMCSLSQLRPLTCAASASASRLVPHPPDLIKWVTREGGFVHRAVKIAQLDSSNGLDLVAKEEIPRGSDLIVLPHHLPLRSTSLEQDPLLHHLARQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALVSLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDPNGTRIDIPMMLPLIDMCNHSFNPNARIVQEQDTSSSKMQVKVVAETAIKEDDPLLLCYGCLNNDLFLLDYGFVMHSNPYDCIELKYDGALLDAASMAAGVSSPYFSTPAPWQELILSQLNLAGETPDFKVSLGGQETVEGRLLAALRVLLSSNMETVQKYDLSTLQSLDADAPLGVANDVAVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKSVIIDVMKNLSRRVKLLSSKETATAEG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00154 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 437 - -
Pumo6g00154 472 SUPERFAMILY SET domain 30 295 IPR046341 -
Pumo6g00154 472 SMART set_7 48 283 IPR001214 GO:0005515
Pumo6g00154 472 FunFam Histone-lysine N-methyltransferase setd3 3 290 - -
Pumo6g00154 472 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 287 466 IPR036464 -
Pumo6g00154 472 FunFam SET domain containing protein 313 466 - -
Pumo6g00154 472 Pfam SET domain 60 277 IPR001214 GO:0005515
Pumo6g00154 472 Gene3D - 328 469 IPR036464 -
Pumo6g00154 472 Gene3D set domain protein methyltransferase, domain 1 5 290 - -
Pumo6g00154 472 ProSiteProfiles SET domain profile. 50 277 IPR001214 GO:0005515
Pumo6g00154 472 CDD SET_LSMT 49 291 - -
Pumo6g00154 472 Pfam Rubisco LSMT substrate-binding 327 447 IPR015353 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo6g00154 SET 6.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00154 6 1801735 1804850 Pumo6g00154 6 1801735 1804850 ECH