Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00151 ATGGAGGCGAAGGGTGTGAGGTTCTTAGCGTACCAATCAATATTTTCGAGCGTTGGATCTGGGGACTTTGATGGGGTGAAGAGATTGGTGGAGAAAGTGAAGAAGGAAGAAGGGTCATCGCTTTCTGATGTGATGTCCCTTCAGAACGATGCTGGAGAGACTGCGCTGTACATCGCTGCAGAGAATAATCTGGAAGAGATTTTCAGCTTTTTGCTCAGCTTCTGTGACTTTGAGGTCCTCAAGATTCGCTCCAAGGCTGATATGAACGCCTTTCATGTTGCTGCCAAGCGTGGCAATATAGATATTGTAAGGGAGCTTTTGAATACTTGGCCTGAGGTCTGCAAGTTATGTGACTCCTCAAACACCAGTCCTCTATATTCTGCTGCAGTTCAAGACCACTTGGATGTGGTGAATGCTATCTTGGATGTCGATGTCAGTTCCATGTTCATAGTTAGGAAAAACGGCAAAACTTCACTGCACAATGCTGCTAGGTATGGTGTCCTTCGTATTGTAAAAACACTTATTGCTCGGGATCCAGGAATAGTATGCATCAAAGATAAAAAAGGTCAAACTGCACTGCATATGGCTGTCAAAGGACAGTCTACTTCAGTGGTGGAGGAGATATTACTAGCTGATCCTTCTATATTGAATGAGCGAGATAAGAAGGGTAATACAGCTCTTCACATGGCTACAAGGAAATGCCGTTCACAGATAGTGAGCCTTTTGCTAAGTTATACTGCTATGGATGTTAATGCCATCAACAAGCAGAAGGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGAGATTCATCTTTGGAAATAAAGGAAGCCCTTGCAGAATATGGTGCTAAGCATGCCAGGTATGTTGGCAAAGAAGATGAAGCAATGGAACTTAAAAGAACTGTGAGTGATATAAAGCATGAGGTGCAGTCACAACTTTTACAAAATGAAACCACCCGCCGACGGGTTTCTGGTATTGCCAAGGAGTTGAAGAAACTTCATAGAGAAGCAGTTCAAAACACCATTAATTCTGTGACAGTGGTTGCTGTCCTTTTTGCCTCAATCGCATTCTTGGCCATCTTCAATTTGCCGGGTCAATATATAACTGTAGAAGAAGGAAATGAGATTGGGAAAGCTCGTATAGCCGATCATGTTAGTTTCCAAGTTTTCTGCCTTCTGAATTCTACATCTCTTTTCATTTCTCTTGCAGTTGTTGTAGTTCAAATTACTTTGGTAGCCTGGGACACAAGGGCTCAAAGGCAGATTGTGTCAGTGGTTAACAAGTTGATGTGGGCTGCATGTGCTTGCACTTGTGGTGCTTTTCTAGCCATAGCTTTTGAGGTTGTTGGAAAGAAAACATGGATGGCTATCACCATCACCCTTTTGGGGGTACCTATTCTAGTTGGCACTCTAGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTCGGTATTTTCCGCAGTGATTCCCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCTTTCTCATGGTCTTACTCTGCAAATATATCAGATTTGGATGAATACAATTCTGACATTGAGAAGATCTATGCCCTGTGA 1590 0.4283 MEAKGVRFLAYQSIFSSVGSGDFDGVKRLVEKVKKEEGSSLSDVMSLQNDAGETALYIAAENNLEEIFSFLLSFCDFEVLKIRSKADMNAFHVAAKRGNIDIVRELLNTWPEVCKLCDSSNTSPLYSAAVQDHLDVVNAILDVDVSSMFIVRKNGKTSLHNAARYGVLRIVKTLIARDPGIVCIKDKKGQTALHMAVKGQSTSVVEEILLADPSILNERDKKGNTALHMATRKCRSQIVSLLLSYTAMDVNAINKQKETALDLADKLPYGDSSLEIKEALAEYGAKHARYVGKEDEAMELKRTVSDIKHEVQSQLLQNETTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYITVEEGNEIGKARIADHVSFQVFCLLNSTSLFISLAVVVVQITLVAWDTRAQRQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKTWMAITITLLGVPILVGTLASMCYFVFRQHFGIFRSDSQRRIKRASGSKSFSWSYSANISDLDEYNSDIEKIYAL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00151 529 Gene3D - 10 305 IPR036770 -
Pumo6g00151 529 Pfam Ankyrin repeats (3 copies) 92 177 IPR002110 GO:0005515
Pumo6g00151 529 Pfam Ankyrin repeats (3 copies) 186 252 IPR002110 GO:0005515
Pumo6g00151 529 ProSiteProfiles Ankyrin repeat profile. 222 247 IPR002110 GO:0005515
Pumo6g00151 529 SMART ANK_2a 51 79 IPR002110 GO:0005515
Pumo6g00151 529 SMART ANK_2a 188 217 IPR002110 GO:0005515
Pumo6g00151 529 SMART ANK_2a 154 183 IPR002110 GO:0005515
Pumo6g00151 529 SMART ANK_2a 120 150 IPR002110 GO:0005515
Pumo6g00151 529 SMART ANK_2a 86 115 IPR002110 GO:0005515
Pumo6g00151 529 SMART ANK_2a 222 252 IPR002110 GO:0005515
Pumo6g00151 529 ProSiteProfiles Ankyrin repeat profile. 154 175 IPR002110 GO:0005515
Pumo6g00151 529 ProSiteProfiles Ankyrin repeat profile. 188 221 IPR002110 GO:0005515
Pumo6g00151 529 ProSiteProfiles Ankyrin repeat region circular profile. 154 175 - -
Pumo6g00151 529 SUPERFAMILY Ankyrin repeat 14 285 IPR036770 -
Pumo6g00151 529 ProSiteProfiles Ankyrin repeat region circular profile. 222 247 - -
Pumo6g00151 529 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 20 508 - -
Pumo6g00151 529 Pfam Domain of unknown function 338 447 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00151 Pumo-Chr6 1780945 1784147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00151 1 529 Miscellaneous Gene Families AT2G01680 69.944 0.0 745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00151 6 1780945 1784147 Pumo6g00151 6 1780945 1784147 ECH