Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00147 ATGTCATCGCCAAACTCCGCCCCTCAGCCCCACGCGCCGCTCCTTCTCCAGCACTCCGATGCCGCCGCCCGCCTCCCAGTCTTGGCGCTCCTCCTCGGCCGCCGCGGCCACTCCGCCATGGTCCGTGAGACGGCGGCGCGTGAGCTGGAGGAGCGCCGCGCCGACTGGACCTACTCGAAGCCGGTGGTGGCGCTGGACATGACGTGGAACATGGCCTTCGTCGTGGTCTCGGCGGTCATGCTCGCCTGCACCGTCAAGGAGAATCCCAACACGCCGATCCGCTGGTGGATCTGCGGCTACGCGCTGCAGTGCCTCGTCCACGTGGCCCTCGTCTGGCTCGAGTACCGGAGGAGGAGCGACGCGCCCAGGGACGAGGAATCTGGTGGCAACCTCGAATACGACGACGTCAACGACACCGACGAAGACGATGTCGGAACCTCCGGGAGTTCCTCTTCCACTGGATTCACAAAACGATGTGCATCATTGAATACCATGATTTCGTTACTTTGGTGGATGGTGGGCTTTTATTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCTCCACGTTTATACTGGTTGACTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTGATTGGAATTGCCCTCTGTTGTTGTTTGCCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAGGGTGCATCAGAATCGGATCTCAGTATACTTCCAAAATACAGATTTCAAATGTTAAGCAATGAGGAAACACCTAGTGAGGGAGGAGGATCAATGATTCCTATGGAGACCAGCAATGGTTACTCGGTGAATGAACGAACACTTTCACACGAGGATGCTGAATGCTGTATATGCATCTCTTCCTATGAGGATGGAGCTGAACTTCATGTTCTTCCTTGTAACCATCATTTCCATTCTACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAATGAACAGGTGTGA 1035 0.5256 MSSPNSAPQPHAPLLLQHSDAAARLPVLALLLGRRGHSAMVRETAARELEERRADWTYSKPVVALDMTWNMAFVVVSAVMLACTVKENPNTPIRWWICGYALQCLVHVALVWLEYRRRSDAPRDEESGGNLEYDDVNDTDEDDVGTSGSSSSTGFTKRCASLNTMISLLWWMVGFYWVVSGGDILLQDAPRLYWLTVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSILPKYRFQMLSNEETPSEGGGSMIPMETSNGYSVNERTLSHEDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00147 344 PANTHER TARGET OF ERK KINASE MPK-1 33 342 - -
Pumo6g00147 344 FunFam E3 ubiquitin protein ligase RIE1 273 341 - -
Pumo6g00147 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 339 IPR013083 -
Pumo6g00147 344 MobiDBLite consensus disorder prediction 121 155 - -
Pumo6g00147 344 Pfam Ring finger domain 292 334 IPR001841 -
Pumo6g00147 344 SMART ring_2 293 333 IPR001841 -
Pumo6g00147 344 CDD RING-H2_PA-TM-RING 292 334 - -
Pumo6g00147 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Pumo6g00147 344 SUPERFAMILY RING/U-box 284 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00147 Pumo-Chr6 1667446 1672901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00147 1 343 C3H Transcription Factor Family AT1G68070 66.762 1.15e-166 466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00147 6 1667446 1672901 Pumo6g00147 6 1667446 1672901 ECH