Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00142 ATGGCGATGGCAAAAGAGAAAGAGGAAGATGAAGAGGAGGTTCAGAACAGTGGGAAGAGATTGAAATGCATGAGGGATGATGAAGTTGAAGCTGACGAAGAAGAAGAGAGTGAGCTTCCTCTAAAGCCAGGATTGTTCTTCTACCCGACAACCCCAACTTCCTTTGTTGTATCTGATGCTCTTGAACCCGATTTTCCCATCATATATGTCAACAAGGTCTTTGAAATCGCCACTGGATATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTATCTGAGATTAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAAGATGGTACTCCTTTGGTGAACAGATTGAGACTTGCACCAATTCATGATGATGACGGGACTGTGACACATGTAATAGGTATCCAACTCTTTTCTGAGGCAAATATAGATCTAAACCATGTCTCGTATCCAGTTTTCAAAGAGACTTGCAATCAAGATTTTGATAAGAATGGTAAATATTCTCCTAAGGGTGGACAATCATTGTACAGTCAGCACCAAGAGATGTGCGGCATTCTTCAGCTTTCTGATGAAGTTTTGGCTCACAACATTTTGTCACGCTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTATGCAGGAGGATCCGTCAATTAACAAAGAATGAGCATGTCAGGAAGATGGTATGTCAAAATGCATGGGGCAAAGAAGTGACAGGCACATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTTACTACTCTCGAGGCTGTTTGTTGGAGAAAACTGACTGTTGGAGGCGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCATCCCCTCCCGGAAGGTGGGGCCACACACTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGGTGTGGCAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACGTGGAGGGAAGTCTGTGGTGGAACCCCACCACTTCCTAGATCATGGCACAGCTCTTGCACAATTGAAGGGTCCAAATTGGTTGTCTCCGGCGGGTGCACAGATGCCGGTGTACTTCTTAGTGACACATATTTACTGGACCTCACAACAGATAATCCAACATGGAGAGAAATTCCAACTTCATGGGCTCCTCCTTCTCGGTTGGGGCACTCACTCTCAGTCTATGGCAGGACAAAGATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTTCGTTCCGGGGAGGCTTATACAATTGATTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATATAGCGCATTCACAGGTTTAGCGAGTCAAAGTGCAGTTGTTCCTCCTCCTAGGCTGGATCATGTTGCTGTCAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCTGGTCTTCACTCACCATCTCAGCTCTTTCTGTTGGACCCTTCTGAAGAGAAACCATCCTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTGTTGGTGTTGGGTGGACACACTGGGGAGGAATGGATACTGAATGAGTTGCATGAGTTGTGCTTGGCAAGTCGACAGGACTCTGACCTGTGA 1875 0.4667 MAMAKEKEEDEEEVQNSGKRLKCMRDDEVEADEEEESELPLKPGLFFYPTTPTSFVVSDALEPDFPIIYVNKVFEIATGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNHVSYPVFKETCNQDFDKNGKYSPKGGQSLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00142 624 FunFam Putative LOV domain-containing protein 282 487 - -
Pumo6g00142 624 SUPERFAMILY Galactose oxidase, central domain 292 609 IPR011043 -
Pumo6g00142 624 Pfam Kelch motif 529 576 IPR011498 GO:0005515
Pumo6g00142 624 SUPERFAMILY F-box domain 205 279 IPR036047 GO:0005515
Pumo6g00142 624 MobiDBLite consensus disorder prediction 1 27 - -
Pumo6g00142 624 FunFam Adagio protein 1 44 173 - -
Pumo6g00142 624 NCBIfam PAS domain S-box protein 66 161 IPR000014 -
Pumo6g00142 624 Pfam Galactose oxidase, central domain 305 355 - -
Pumo6g00142 624 CDD PAS 51 161 IPR000014 -
Pumo6g00142 624 ProSiteProfiles PAS repeat profile. 67 122 IPR000014 -
Pumo6g00142 624 Pfam F-box domain 211 248 IPR001810 GO:0005515
Pumo6g00142 624 SUPERFAMILY PYP-like sensor domain (PAS domain) 62 162 IPR035965 -
Pumo6g00142 624 FunFam Putative LOV domain-containing protein 488 620 - -
Pumo6g00142 624 Pfam PAS domain 61 161 IPR000014 -
Pumo6g00142 624 Gene3D - 488 618 IPR015915 GO:0005515
Pumo6g00142 624 Gene3D - 363 487 IPR015915 GO:0005515
Pumo6g00142 624 CDD F-box_AtADO-like 210 256 - -
Pumo6g00142 624 MobiDBLite consensus disorder prediction 1 38 - -
Pumo6g00142 624 SMART pac_2 126 167 IPR001610 -
Pumo6g00142 624 Gene3D PAS domain 48 173 - -
Pumo6g00142 624 Pfam Galactose oxidase, central domain 370 417 - -
Pumo6g00142 624 Pfam Galactose oxidase, central domain 419 470 - -
Pumo6g00142 624 Gene3D - 199 298 - -
Pumo6g00142 624 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 33 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00142 Pumo-Chr6 1620508 1623998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00142 50 163 AGC Kinase Gene Family AT5G58140 43.860 1.22e-21 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00142 6 1620508 1623998 Pumo6g00142 6 1620508 1623998 ECH