LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g00132	ATGGTGAAATCGAACGAAAATGGTTCCGGTTCCGGTCCCGGTTCCGGTTCGGTACCTCCTTTCTTGAAGAAATGTTACGATATGGTGGAAGACCGAAACACCGACTCTATTATCCGTTGGAGCGATGGCGGTGATAGTTTTGTCATCTCCGACATCACTCAATTCTCTGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAACTTTGTTAGGGGTCAAAAGCATTTGTTGAGGAATATACGTAGAAGGAAACATCCACACACTGCGGATCACCAAAAAGCATTGCCTCAGCAGCAAGACAATTGTGATGAACCATCGCAAGAATCACCGAATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAATCTGATAAAAATTCACTCACCCAGGAGTTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGTTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAACATCAGCAGCAGATGTTATCATTCTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTGCTTCATCCTAAGGAAAATAATTGGCGTTTGGCCGAATCATGGAATATATTGGATCAAGATAAACAAGATGACAAACCTGTTGCTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCGCTATCTCCTGGTTTCGATAAGCAACCAGAACCTGAGCTTTCTGCAGATGGGCTAAAAGACTTGTCCATCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTGTCTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTCTAGGTAGTTCTTTCCTGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACTGATAGTGGAATGGAGATGGAACCCACAATACCTGAGACTCCAAATGAAAACTCTCGAACTTTTGAAACAATGATTGTAGAAATGGAGAAAGCTTGCGAGTGA	1110	0.4162	MVKSNENGSGSGPGSGSVPPFLKKCYDMVEDRNTDSIIRWSDGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLRNIRRRKHPHTADHQKALPQQQDNCDEPSQESPNHGLWKEVENLKSDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENNWRLAESWNILDQDKQDDKPVASDGMIIKYKPPVGEKLKPVVPLSPGFDKQPEPELSADGLKDLSISSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSSFLGNIQDSNKESEGHTDSGMEMEPTIPETPNENSRTFETMIVEMEKACE	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g00132	369	Gene3D	-	15	111	IPR036388	-
	Pumo6g00132	369	MobiDBLite	consensus disorder prediction	326	353	-	-
	Pumo6g00132	369	MobiDBLite	consensus disorder prediction	110	139	-	-
	Pumo6g00132	369	FunFam	Heat stress transcription factor B-4	14	111	-	-
	Pumo6g00132	369	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-
	Pumo6g00132	369	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo6g00132	369	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo6g00132	369	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo6g00132	369	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo6g00132	369	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo6g00132	369	Coils	Coil	145	172	-	-
	Pumo6g00132	369	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	9	233	IPR027725	-
	Pumo6g00132	369	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pumo6g00132	369	MobiDBLite	consensus disorder prediction	119	135	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g00132	Pumo-Chr6	1507760	1510431	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g00132	18	319	HSF	AT1G67970	49.342	9.75e-91	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pumo6g00132		HSF_DNA-bind	1.5e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo6g00132	6	1507760	1510431	Pumo6g00132	6	1507760	1510431	ECH