Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03180 ATGTCCAACACTCTGCAACAGCAACAACAACAACCGAGTCCCGAATCCAAACGACTCGATCCGGGTTCCAACGCTTCCCGGCCCGGCCACCGGAGATCGGTCTCCGCCGGAGCTCCGTTAATCTACTCCGGCGGAGCCACTTTACTGCCGAGCGGGAACATTTGCCCGTCGGGGAAGATCCTCAAACCGGGTTTGCCCTCTCGCGGGCCGAACCGGACCGACGTGTTGGGCTCGGGCACCGTGAACTACGGCCGGGGCAGCATAATGCGCGGCGGCTCGGGCAGTTATCCTGTGCCTGCGGGCGCATCGCCGCTTACGGTGAAGCGCACGCTGAACGGCTCCGATCCCGAGGAAGTGAAGAGGGCTGGGAATGAGCTGTACAGAGGCGGGAACTTTGTGGAGGCGCTGGCATTCTACGATCGCGCCGTCGCCATCTCGCCGGGAAACGCCGCGTGCCGGAGCAACCGAGCGGCGGCGCTCACGGCGCTCGGGAGGGTCGGCGAGGCCGCGAGGGAGTGCCACGAGGCGGTGAAGCTGGACCCTGCTTATGCCAGAGCGCACAAGAGACTTGCTTCTCTTTATTTAAGGTTTGGGCAGGTTGAGAATTCGCGGCGCCACCTGTGTCTCTCTGGGGTTCAAGAGGATCAATCGGAGGAGCAGAAGCTGGTGTTGTTGGAGAAGCATTTGAATCGATGCGCTGATGCGCGAAAATTTGGTGATTGGAAGAGGGTGCTTCGGGAATCAGAAGCAGCCATTGCTGTTGGAGCAGATTTTTCGCCTCAGATTGTTGCTTGCAAGGCGGAAGCTTATTTAAAACTGCATCAACTTGAGGATGCTGAATCCAGTCTCTTGAACATTCCGAAGTTGGAAGGCTGTCCTCCAGCATGTTCTCAAACCAAGTTCTTTGGTATGGTTGGGGAAGCCTATGTTCCTTTTGTGTCTGCACAGGTTGAGATGGCCTTGGGGAGGTTTGAGAATGCTGTTGTGGCAGCAGAAAAGGGTAGCATGTTAGATTACAGTAATGTTGAAGTTGATAGGATAGTAAATGTTGTGAAAATGGTGGCACGAGCTCGTTCCAGGGGCAATGATCTTTTCAGCTCTGGCAAGTTTTCTGAAGCTTGTTCTGCATATGGAGAAGGCCTTAAGTATGACAACTCCAATTATGTTCTATATTGCAATAGGGCTATTTGTTGGTCTAAACTTGGACTATGGGAACAATCCGTCCAAGACTGCAACCAAGCTCTTAACATTCAACCAAACTACACCAAGGCCCTTTTCCGCAGGGCTGCGTCAAACACAAAGCTTGAAAGATGGTCAGAAGTTGTTAAAGATTATCAGGCCTTAAAACGTGAACTCCCTAACGACAATGAAGTTGCCGAGTCTCTTCGTCAAGCTCAACTAGCATTAGAAAAATCTCGACAAATGGTGTATGGTACTAAGTTTGGAGTTGAAGTTGAACAAATCTCAGCATTAGATAAATTTAAAGCTGCAATTGCCTCGGCAGGTGTATCGGTAGTATATTTCAAAGAGGCATCAAACGAACTATGTGAGGAATTATCTCCATTCATAAATACGTTGTGTGTTAGATATCCCTCAGTTAAATTTATCAAGGTGGACGTGGAGGAGTGTCTAGCAATAGCAAAAGCTGAAAGCATAAGAAGTGTTCCAACCTTTAAAATTTATAAAAATGGAGAGAAGGTAAAGGACATGATCCGGCCAACCCATCAGTTATTAGAGGACTCAGTAAGAAAAAGTAGTAGTCTCTAG 1767 0.5003 MSNTLQQQQQQPSPESKRLDPGSNASRPGHRRSVSAGAPLIYSGGATLLPSGNICPSGKILKPGLPSRGPNRTDVLGSGTVNYGRGSIMRGGSGSYPVPAGASPLTVKRTLNGSDPEEVKRAGNELYRGGNFVEALAFYDRAVAISPGNAACRSNRAAALTALGRVGEAARECHEAVKLDPAYARAHKRLASLYLRFGQVENSRRHLCLSGVQEDQSEEQKLVLLEKHLNRCADARKFGDWKRVLRESEAAIAVGADFSPQIVACKAEAYLKLHQLEDAESSLLNIPKLEGCPPACSQTKFFGMVGEAYVPFVSAQVEMALGRFENAVVAAEKGSMLDYSNVEVDRIVNVVKMVARARSRGNDLFSSGKFSEACSAYGEGLKYDNSNYVLYCNRAICWSKLGLWEQSVQDCNQALNIQPNYTKALFRRAASNTKLERWSEVVKDYQALKRELPNDNEVAESLRQAQLALEKSRQMVYGTKFGVEVEQISALDKFKAAIASAGVSVVYFKEASNELCEELSPFINTLCVRYPSVKFIKVDVEECLAIAKAESIRSVPTFKIYKNGEKVKDMIRPTHQLLEDSVRKSSSL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03180 588 MobiDBLite consensus disorder prediction 1 37 - -
Pumo4g03180 588 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 583 IPR044534 -
Pumo4g03180 588 ProSiteProfiles TPR repeat profile. 116 149 IPR019734 GO:0005515
Pumo4g03180 588 MobiDBLite consensus disorder prediction 1 20 - -
Pumo4g03180 588 Gene3D Glutaredoxin 473 586 - -
Pumo4g03180 588 SMART tpr_5 150 183 IPR019734 GO:0005515
Pumo4g03180 588 SMART tpr_5 354 387 IPR019734 GO:0005515
Pumo4g03180 588 SMART tpr_5 388 421 IPR019734 GO:0005515
Pumo4g03180 588 SMART tpr_5 422 455 IPR019734 GO:0005515
Pumo4g03180 588 SMART tpr_5 116 149 IPR019734 GO:0005515
Pumo4g03180 588 CDD TRX_family 494 579 - -
Pumo4g03180 588 Gene3D Tetratricopeptide repeat domain 114 472 IPR011990 GO:0005515
Pumo4g03180 588 Pfam Tetratricopeptide repeat 130 190 - -
Pumo4g03180 588 Pfam Thioredoxin 492 574 IPR013766 -
Pumo4g03180 588 FunFam TPR repeat-containing thioredoxin TTL4 479 586 - -
Pumo4g03180 588 SUPERFAMILY TPR-like 110 468 IPR011990 GO:0005515
Pumo4g03180 588 SUPERFAMILY Thioredoxin-like 396 581 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03180 Pumo-Chr4 65370978 65374247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03180 130 201 Glycosyltransferase AT3G04240 36.111 3.06e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03180 4 65370978 65374247 Pumo4g03180 4 65370978 65374247 ECH
Pumo11g00559 11 19790819 19794923 Pumo4g03180 4 65370978 65374247 PCT