Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00492 ATGGCTGCTTCTACTCGCAATGAGTTTTATGCGCTTATGCTAGTGGTGGTTGTTGGCTCCATGGTGGCTTCCTGTGGTGCTAACTTCTACCAAGACTTTGATCTAACATGGGGTGATCACCGTGCTAAGATATTCAATGGTGGTCAGCTTCTATCTCTTTCTCTGGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACCTATTTGGCAGGATCGATATGCAGCTCAAGCTCGTTGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCGTCTCAAGGGCCAACTCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCCTACATTCTCCACACAAACGTGTTTACCCAAGGCCAAGGGAACAGAGAGCAACAGTTCTACCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATTATATTCTTGGTCGATAACATTCCCCTAAGGGTGTTCAAGAATGCTGAGACTATTGGCGTTCCTTTCCCAAAGAACCAACCCATGAGAATCTATTCTAGCTTGTGGAACGCTGATGACTGGGCCACCAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAGGCACCCTTTACCGCATACTACCGCAATTTCAAAGCCACAGAGTTCTCTGTGTCTTCCAATTCCTTCTCTGATGCTGCATGGCAGAGCAACGAGCTTGACGCCTATGGCAGAAGAAGACTGAGATGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAATGATCTTAGGCGATTCCCACAAGGCCTTCCTGCTGAGTGCAGGCGCTGA 840 0.481 MAASTRNEFYALMLVVVVGSMVASCGANFYQDFDLTWGDHRAKIFNGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPLRVFKNAETIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSVSSNSFSDAAWQSNELDAYGRRRLRWVQKYFMIYNYCNDLRRFPQGLPAECRR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00492 279 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 217 IPR000757 GO:0004553|GO:0005975
Pumo1g00492 279 Pfam Glycosyl hydrolases family 16 30 210 IPR000757 GO:0004553|GO:0005975
Pumo1g00492 279 CDD GH16_XET 26 277 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo1g00492 279 ProSitePatterns Glycosyl hydrolases family 16 active sites. 103 113 IPR008263 GO:0004553|GO:0005975
Pumo1g00492 279 Gene3D - 14 279 - -
Pumo1g00492 279 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 277 IPR044791 GO:0004553
Pumo1g00492 279 FunFam Xyloglucan endotransglucosylase/hydrolase 15 279 - -
Pumo1g00492 279 PIRSF EndGlu_transf 1 279 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo1g00492 279 PRINTS Glycosyl hydrolase family 16 signature 119 132 IPR008264 GO:0004553|GO:0005975
Pumo1g00492 279 PRINTS Glycosyl hydrolase family 16 signature 61 79 IPR008264 GO:0004553|GO:0005975
Pumo1g00492 279 PRINTS Glycosyl hydrolase family 16 signature 137 154 IPR008264 GO:0004553|GO:0005975
Pumo1g00492 279 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Pumo1g00492 279 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 235 277 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pumo1g00492 279 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 278 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00492 Pumo-Chr1 6499425 6500965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00492 11 279 Glycoside Hydrolase AT3G23730 74.286 6.01e-162 449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00492 1 6499425 6500965 Pumo1g00492 1 6499425 6500965 ECH