Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00416 ATGGATAATGGTTGTTTCTCTTCCCCTCGACGTGATTTTCCTGCTGGTCTGAGAGTTCTCGTTGTGGATGATGATCCAACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAGCTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTGATGAAAGGCGTTCAACATGGAGCCTGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAGCATGTCTTTAGAAAAAGGATACATGAGGCAAAAGAATTTGAAAGTTTTGAGAGTTTTGAGAGCATTCACTTAATGAGAAATGGATCAGAGCTATCAGATGATGGGAACCTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTTTGGATCCATCATCCACCAAGAAAGCTAGAGTGGTCTGGTCTGTTGATCTTCATCAGAAGTTTGTTAAAGCGGTGAATCAGATTGGATTTGATAAAGTGGGGCCCAAGAAAATACTTGATTTAATGAACGTTCCATGGCTAACTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACAGGCTTTATTTGAGTAGGATTCAGAAAGAAAACGATCAAAGATCTTCCTCAAGTGGAATGAAGCATTCAGATTTTCCTTCAAAAGATCTGGGAAGTTTTGGTTTCCAGACCTCAGTAAACAAGCAACAAAATGATGTTTCAGTTGACAGCTACAATTATTCGGATGGATCATTACAACTTCAGAACGTGGAAACTAAAAGTCATGAAGCTGATCCCAAGGGAATTGTTTCACAGTCCACCACAGCAAAAAAAGGAAGGGCTTTGACTGGTAACATTGCTGACACAAATATGAGAGAGGGTTTAAGGGTTGGCCTTGATCAACCTTTTGCCCCTGTGGAGTCAGAAGGAAACCATGCAGTGTTTGATTGCTCCATGCCAACACAGTACTCTTGGACTGAAGTTCCTCACATGCAACTCAAGGAAGAACACAAGTTACTTGTTCATTTAGAAGATAGCTTCAATCAGTTGCCATTACATGGTAAGCAGCATCACATCCAAGTTGATCAATCACAATCAGTTGCTTCAATTAGTTCTGCTCCCACTATAACGGAAGAAGAGGTTGCTGCTTGCATAGAAGCAAAACCTTTGTTTGCAGATTACAAAAATGATTATGCCAGTCCTGTGAGTTCAATAGGGAATGCAGTTGACACCTTTCCCATTCAACCAGGAAGTCTTATAATGAACGATCAATCTTCAGAACCCATTTCCACTACAAATTCAGGATTGAAAACACAGGGATATAATAATCTCAGTAGCATTTCTGATCTGGAAATTTACCAAAGAAACCTTCCTTTGGGAGGTGAGGCAGCTTCTGCACCTTTGGATGAGGACTTGCATTTCTATTGGCTACAAGGTGAATGCTACAATATGAACTTCGGTCTGCAGAATATAGGAATGTCTGAATATTATGATCCAGGACTTATTTCAGAAGCTCCAACCCACTTATATGATTCAGCCGATTACTCAGTTATAGATCAAGGTCTATTCATAGCATGA 1746 0.4032 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESIHLMRNGSELSDDGNLFAVEDVTSTKKRKDADNKHDDKECLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGMKHSDFPSKDLGSFGFQTSVNKQQNDVSVDSYNYSDGSLQLQNVETKSHEADPKGIVSQSTTAKKGRALTGNIADTNMREGLRVGLDQPFAPVESEGNHAVFDCSMPTQYSWTEVPHMQLKEEHKLLVHLEDSFNQLPLHGKQHHIQVDQSQSVASISSAPTITEEEVAACIEAKPLFADYKNDYASPVSSIGNAVDTFPIQPGSLIMNDQSSEPISTTNSGLKTQGYNNLSSISDLEIYQRNLPLGGEAASAPLDEDLHFYWLQGECYNMNFGLQNIGMSEYYDPGLISEAPTHLYDSADYSVIDQGLFIA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00416 581 FunFam Two-component response regulator 195 258 - -
Pumo1g00416 581 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Pumo1g00416 581 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Pumo1g00416 581 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 304 IPR045279 GO:0009736
Pumo1g00416 581 CDD REC_typeB_ARR-like 19 133 - -
Pumo1g00416 581 SMART REC_2 17 129 IPR001789 GO:0000160
Pumo1g00416 581 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Pumo1g00416 581 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Pumo1g00416 581 SUPERFAMILY CheY-like 16 146 IPR011006 -
Pumo1g00416 581 FunFam Two-component response regulator 17 205 - -
Pumo1g00416 581 Gene3D - 195 258 - -
Pumo1g00416 581 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Pumo1g00416 581 Gene3D - 17 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00416 Pumo-Chr1 5858980 5863138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00416 13 265 Response Regulator Gene Family AT2G25180 56.641 1.32e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo1g00416 Response_reg 2.3e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00416 1 5858980 5863138 Pumo1g00416 1 5858980 5863138 ECH
Pumo1g00416 1 5858980 5863138 Pumo6g01293 6 17192853 17197745 PCT