Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00622 ATGGTTTTGTCTTGGACTAGAAGAAAAGGTTTTCGCTCTACCCGGAAGGAGAAAGATAATTCTACTGCAGATTTGGACATGGAGGTTATAATTCCAAGCCACTTCAGGTGTCCAATTTCATTGGATTTGATGAAAGATCCTGTCACTTTGGTGACTGGAATCACATTTGATAGAGAGAGCATTGAGAAGTGGATTGAAGCTGGAAATCAAACATGTCCTGTGACAAACCAGGTGTTGAGGAGCTTTGATCAGATCCCAAATCATAGTATCAGGAGGATGATCCAAGACTGGTGCGTCGACAACCGATCTTTCGGGATTGAAAGGATACCGACACCGCGAATTCCGGTGAGTCCTAGTGAGGTATTGGAGATTTGTAAGAAGATAAAGGCTGCAACTCAGCGCGGAGATGACAAGATGTGCCAAGAAATGGTGAGGAAGATCAATGTTTGGGGAAAAGAGAGTGAGAGAAACAGAAAGTGTTTAGCCTACAACGGGGCTGATCTTGCCTTATGCAATGCTTTTGAGTCTTTCTCATGTTCAGCAGAGAAACATGCTGGTGTGTTAGAGGAGATCTTGTCTGTCCTAACATGGATGTTCCCAAACATTGGAGAAGAAGGGCGAGCAAAGTTAGGTTCTGCAGTCCCTTTACAATGCATGGTGTGGTTCTCAAAGGGGAGAGACCTCACTGTACGGCAAAATGCAGCTGTAGTACTGAAAAATCTTGCTTGTCTAGATGAGTTACAGGTTGAAGCATGGATGAAGATTGAAGGACTTGCTGAGGCTTTGGTAAAGTTAGTTGGGGAAGCAGTTGGACCCATAGCTACCAAGGCTTCTTTGACAACCATTCTGCAAATGATTTCTTGCAATGGAAGCAACAAGAGAATCATGAGAACATTTGTGGAATTGGGTCTAATCCCACTTTTACTTGAAATTCTTGTGGATGCAGAGAAAAGCACATGTGAGATGGCTTTGGGGGTATTGGATGGACTTTGTGATTGTCAAGAAGGGAGAGAGATGGTTAAGACAAATGCATTGACCATTCCTCTAATAGTTAAGAAGATTCTTCGTGTGTCAGTTACGGGTTCTGAGTTTTCAATTTCAATTCTTTGGAAGCTTTGCCAAAAGAAAAATGAAAATGTAGAAGGTGTTCTCATGGAGGCACTTCAACTGGGTGCATTTCAAAAGCTTTTGGTTGTCTTGCAGGTTGGTTGTGGTGAGAGCACAAAAGGGAAGACAACGGAGTTGTTGAAATTGCTGAATACACACAAGAGGAAAGTGGAGTGTGTGGATTCATCGTTAGAACTCAAGTATCTCAAGAAGCCATTTTGA 1329 0.4266 MVLSWTRRKGFRSTRKEKDNSTADLDMEVIIPSHFRCPISLDLMKDPVTLVTGITFDRESIEKWIEAGNQTCPVTNQVLRSFDQIPNHSIRRMIQDWCVDNRSFGIERIPTPRIPVSPSEVLEICKKIKAATQRGDDKMCQEMVRKINVWGKESERNRKCLAYNGADLALCNAFESFSCSAEKHAGVLEEILSVLTWMFPNIGEEGRAKLGSAVPLQCMVWFSKGRDLTVRQNAAVVLKNLACLDELQVEAWMKIEGLAEALVKLVGEAVGPIATKASLTTILQMISCNGSNKRIMRTFVELGLIPLLLEILVDAEKSTCEMALGVLDGLCDCQEGREMVKTNALTIPLIVKKILRVSVTGSEFSISILWKLCQKKNENVEGVLMEALQLGAFQKLLVVLQVGCGESTKGKTTELLKLLNTHKRKVECVDSSLELKYLKKPF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00622 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 105 IPR013083 -
Pte8g00622 442 SUPERFAMILY ARM repeat 185 400 IPR016024 -
Pte8g00622 442 PANTHER WDSAM1 PROTEIN 28 429 IPR045185 GO:0061630
Pte8g00622 442 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Pte8g00622 442 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Pte8g00622 442 CDD RING-Ubox_PUB 32 83 IPR045210 -
Pte8g00622 442 SUPERFAMILY RING/U-box 30 106 - -
Pte8g00622 442 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Pte8g00622 442 Gene3D - 121 432 IPR011989 -
Pte8g00622 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00622 Pte-Chr8 28816424 28817989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00622 28 443 U-box Gene Family AT5G37490 51.799 6.60e-138 401
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00622 8 28816424 28817989 Pte8g00622 8 28816424 28817989 RCT