Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01538 ATGCAACTGAAGCTTGTCCCTGGCAACTCTGCTGGCACTGTAACTGCATATTATTTATCCTCCAAAGGGTCAACATGGGATGAGATTGACTTTGAATTCTTGGGGAATTTGAGTGGTGACCCTTACATCCTTCACACCAATGTCTTCAGCCAAGGCAAAGGGAACAGAGAACAACAATTCTACCTCTGGTTTGATCCAACTGCTGATTTCCACACCTACTCAATTCTTTGGAATCCACAACGCATTGTTTTCTCTGTGGATGGTAGTCCAATAAGAGAGTTCAAGAACTTGGAGTCTCGTGGTGTGCCATTTCCCAAGAACCAAGCAATGAGGATATACTCTAGTCTATGGAATGCCGATGATTGGGCTACAAGAGGAGGGCTTGTGAAGACGGACTGGGGCCAAGCTCCTTTCACTGCTTCCTACAGAAACTTTAATGCCAATGCTTGTATTTGGTCCTCAGGAGCATCATCCTGTAAATCAAATTCTGCCTCTTCTAGCTCCTCTACCAGCAATACTTGGCTCTCAGAGGAGTTGGATTCTACAGGTCAATTGAGGCTTAAGTGGGTTCAAAAGAATTACATGATTTACAATTACTGCACCGACATCAAAAGGTTTCCACAAGGAATCCCACCAGAGTGCAATATCTGA 651 0.4424 MQLKLVPGNSAGTVTAYYLSSKGSTWDEIDFEFLGNLSGDPYILHTNVFSQGKGNREQQFYLWFDPTADFHTYSILWNPQRIVFSVDGSPIREFKNLESRGVPFPKNQAMRIYSSLWNADDWATRGGLVKTDWGQAPFTASYRNFNANACIWSSGASSCKSNSASSSSSTSNTWLSEELDSTGQLRLKWVQKNYMIYNYCTDIKRFPQGIPPECNI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01538 216 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 170 214 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pte3g01538 216 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 1 214 IPR044791 GO:0004553
Pte3g01538 216 ProSitePatterns Glycosyl hydrolases family 16 active sites. 28 38 IPR008263 GO:0004553|GO:0005975
Pte3g01538 216 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 142 IPR000757 GO:0004553|GO:0005975
Pte3g01538 216 Gene3D - 1 216 - -
Pte3g01538 216 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 215 IPR013320 -
Pte3g01538 216 FunFam Xyloglucan endotransglucosylase/hydrolase 1 216 - -
Pte3g01538 216 Pfam Glycosyl hydrolases family 16 2 133 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01538 Pte-Chr3 13851736 13852899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01538 1 214 Glycoside Hydrolase AT4G25810 76.636 8.18e-126 355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01538 3 13851736 13852899 Pte3g01538 3 13851736 13852899 RCT