Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00854 ATGAAACCAGTATTTGATCTTGAAGTAGAGGCCTTTGCAGAAAATGAATCTGAAGTCAGTAGCCAAGTTGCTTCCAACTTATCTGCTCAAGACATATCTGCAGTACCCTCAAGTGAAACCCTTACTAATTCTTTCAGTCTTAGGAATCATAATGGGGCTCAACCGAACACCGAGCTAGTGTCACTTGACTTAACTCTCAACTGCGATGGTAATGAATTAGGTGATTCAATTGGACCGTCGACATTGTTAAGTACCAGTGAGAGCAGCAACGACCCTGTAGCTCGAACTACTTCTTCGACTGTCCCTCGAGTTTTCTCCTGCAACTACTGTCAGCGCAAATTTTACAGCTCACAGGCCCTTGGTGGTCACCAGAATGCACACAAACGAGAAAGAACGCTGGCGAAACGAGCTATGCGAATGGGGTTTTTTACTGATAGGTATACCAGTCTAGCATCATTGCCTCTGCATGGTTCTTTCAGGTCCTTAGGAATAAAGGCACATTCCTCACAACACCAAGGTCTTTCTACAACAACGAGGCCTCCTGAGATTAAAGGCAATGCTAGACTTGAGCAGAGTTATATGGGGGTACCTATGTTCTTGGATGAAGAGGAGGGCGTATTTATGTGGCCTGGTAGTTTCCGTCATGTTGCAGAGTTGGACATGAAAGGGCTATGGCTACCAGCACGTCTTTACTTTCCTGAGTTCTTGGCCGCCTCGTGTTTTCATTTGATAAATCGATCCTTGGATGTCTTTCTCTGGATGTTAGATGTTTGTACGTGA 780 0.4487 MKPVFDLEVEAFAENESEVSSQVASNLSAQDISAVPSSETLTNSFSLRNHNGAQPNTELVSLDLTLNCDGNELGDSIGPSTLLSTSESSNDPVARTTSSTVPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGFFTDRYTSLASLPLHGSFRSLGIKAHSSQHQGLSTTTRPPEIKGNARLEQSYMGVPMFLDEEEGVFMWPGSFRHVAELDMKGLWLPARLYFPEFLAASCFHLINRSLDVFLWMLDVCT* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00854 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Pte18g00854 259 Gene3D Classic Zinc Finger 86 148 - -
Pte18g00854 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 36 178 IPR044246 GO:0009788
Pte18g00854 259 SUPERFAMILY beta-beta-alpha zinc fingers 103 132 IPR036236 -
Pte18g00854 259 MobiDBLite consensus disorder prediction 78 97 - -
Pte18g00854 259 FunFam Zinc finger protein 2 83 151 - -
Pte18g00854 259 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00854 Pte-Chr18 20970325 20971457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00854 87 216 C2H2 Transcription Factor Family AT1G66140 52.564 3.59e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte18g00854 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00854 18 20970325 20971457 Pte18g00854 18 20970325 20971457 RCT