Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00875 ATGGCTGCTTCATCCAAATCAGTAATGGCTTCATTAACCCATTTACGCACGCGCCCTCTAACATGTGCAGCGGCTTCTGCTTCATTTACAAGTCGGCTTGCGCCACACCCACCTGACCTTATCAAATGGGTTCGCAAGGAAGGTGGGTTTGTGCACCAAGCAGTGAAGATAGCACAAGATGACACCAATCAAGGTCTCGGACTTGTTGCTTCTCAAGATATCCCAAAAGGGTCTGAGCTTATTTCTCTTCCATCTCATGTTCCTTTGAGATTCAGGTCTCCTCTTGAGCTGGATAGTCAAAATGATGCATTTGGGCTTCACTCTGTGTTGATTGATTTGGCTCACCAAATTCCTGAGGAATTATGGGCAATGAAACTGGGATTGAAGCTTCTGCAAGAAAGAGCAAAGGTTGAATCATTCTGGTGGCCTTACATCAGCAATCTTCCTGAAACATATAATGTGCCTATCTTTTTTCCGGGAGAAGATATAAAGAATTTGCAGTATGCTCCTGTTTTGCATCAGGTAAATAAAAGATGTCGGTTTCTTCTTGAGTTGGAGCAACAAGTCAAAGGTCTTCTTGGAAATGTGGAACCAAAAAACCATCCTTTCAATGACCAAGAAGTAGATGCATCTGCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCATTTCGTTTGTACAGTAAAAAGCTTGAGGATGGAAGCCGGAAGGATATACCCATGATGCTTCCTCTTATTGATATGTGTAACCACAGCTTCAAACCAAATGCTCAAATTGTCCAGGAAGAAAAAGGGAAGGACATGAATATCCAAGTGAAGGTTATTGCTGCAACCGAAATCAAACAACGTGATTCCTTATTGCTTAGTTATGGATGCTTGAACAATGATTTGTTACTACTAGACTATGGATTTGTGATACCTTCAAATCCCTATGACTGTGTTGAGCTCAGATATGATGCTGGTCTTTTTGATGCTGCTAGCACTGCAGCTGGGGTTTCTTCACCCAGCTTTTTAGCTCCATTATCATGGCAGCAAAAGATTTTATCTCAGCTAAATTTTTTGGGGGAATCTGCTGATCTGAAGGTCACTTTAGGTGGTTCAGATATGGTAGATGGTCGATTACTTGCAGCATTGAGAGTACTCCATGCGACTGACATGGAGGCAGTTGAGAAGTGTGATTTCAACACAATTATGTCTATTTCAGCTGAAGCTCCTCTTGGAGTTGCAAATGAAATAGCTTCTTTTCGTGCACTTATAGCTCTCTGTGCAATTGCACTAGAACATTTCCCCACCAAAATAATGGAAGATCAAGCACTACTGAAGCAAGGTTTCGCAGATTCGACTGAGCTGGCCATCCAGTTTAGGATCCAGAAGAAATCTGTCATTATAGATGTGATGAGGAATCTAGCTAGGAGGGTTAAACAGCTCTCATCAATAGGATCGGTCACTGCATAA 1458 0.4232 MAASSKSVMASLTHLRTRPLTCAAASASFTSRLAPHPPDLIKWVRKEGGFVHQAVKIAQDDTNQGLGLVASQDIPKGSELISLPSHVPLRFRSPLELDSQNDAFGLHSVLIDLAHQIPEELWAMKLGLKLLQERAKVESFWWPYISNLPETYNVPIFFPGEDIKNLQYAPVLHQVNKRCRFLLELEQQVKGLLGNVEPKNHPFNDQEVDASALGWAMSAVSSRAFRLYSKKLEDGSRKDIPMMLPLIDMCNHSFKPNAQIVQEEKGKDMNIQVKVIAATEIKQRDSLLLSYGCLNNDLLLLDYGFVIPSNPYDCVELRYDAGLFDAASTAAGVSSPSFLAPLSWQQKILSQLNFLGESADLKVTLGGSDMVDGRLLAALRVLHATDMEAVEKCDFNTIMSISAEAPLGVANEIASFRALIALCAIALEHFPTKIMEDQALLKQGFADSTELAIQFRIQKKSVIIDVMRNLARRVKQLSSIGSVTA* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00875 485 CDD SET_LSMT 54 306 - -
Pte12g00875 485 Pfam Rubisco LSMT substrate-binding 342 462 IPR015353 -
Pte12g00875 485 FunFam Histone-lysine N-methyltransferase setd3 4 305 - -
Pte12g00875 485 Gene3D set domain protein methyltransferase, domain 1 6 305 - -
Pte12g00875 485 Pfam SET domain 65 292 IPR001214 GO:0005515
Pte12g00875 485 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 302 480 IPR036464 -
Pte12g00875 485 Gene3D - 308 479 IPR036464 -
Pte12g00875 485 ProSiteProfiles SET domain profile. 53 292 IPR001214 GO:0005515
Pte12g00875 485 SUPERFAMILY SET domain 35 310 IPR046341 -
Pte12g00875 485 SMART set_7 53 298 IPR001214 GO:0005515
Pte12g00875 485 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 33 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00875 Pte-Chr12 11086753 11090624 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte12g00875 SET 2.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00875 12 11086753 11090624 Pte12g00875 12 11086753 11090624 RCT