Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00871 ATGACTCTGACTGCAGCAGCCGTTAACACACTTAAGTCCTCCAAGCTCATCTCTTGGAAACCAAGCGGTAAGCTGCAGCAAACTATCGCAGCCTGTGTGGAGCGAGTGGGAAAGACTTTACATTCTGGTAAGGTATCCAAGGTGAGACTTTGTCCAGAATTTGCCGGCAGAGGAAGGTACTTTGATTTCCTGTCCAATCAAATTCCTGCTTCCATTGATTTCATTGAACAATCCCCTCTCTGCAATACGCTGTGTAAAGATGGTCTCAGAATTCGAACTGTTGAGCATTTGCTTTCGGCATTGGAAGCCCTGGGTGTCGATAACTGTCGGATTCATGTGGAGAGTTTGGATGATGAAGAACACGACACTGAGATTCCTATTTTGGATGGGTCAGCAATAGAATGGGTTAAGGCTGTCGAAGAAGTGGGTTTAAAAGTAGCTGAAGATCATTTGGGCAACAATCATGAAAAACTAATGCCTGTTATCAGTGAACCAGTGCATGTGTGGAGGAAAGATGCTTTTGTTTCTGCATATCCTTCACCTGTATTTCGTGTAACATATGGCATTGACTTCCCTCAGGTTGGTGTAATTGGCTGCCAGTGGTTTTCTGCACTGCCCTTAGAAAGATCATTTTACGTTAATCACATAGCTAATTCAAGAACTTTCTGTATTTATGAGGAGGTTAGTCTAAGCTTTTTCTATTCTCTGTCTTGTCATCGAATTGCTTGA 729 0.4294 MTLTAAAVNTLKSSKLISWKPSGKLQQTIAACVERVGKTLHSGKVSKVRLCPEFAGRGRYFDFLSNQIPASIDFIEQSPLCNTLCKDGLRIRTVEHLLSALEALGVDNCRIHVESLDDEEHDTEIPILDGSAIEWVKAVEEVGLKVAEDHLGNNHEKLMPVISEPVHVWRKDAFVSAYPSPVFRVTYGIDFPQVGVIGCQWFSALPLERSFYVNHIANSRTFCIYEEVSLSFFYSLSCHRIA* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00871 242 SUPERFAMILY Ribosomal protein S5 domain 2-like 164 229 IPR020568 -
Pte12g00871 242 Gene3D lpxc deacetylase, domain 2 160 232 IPR011334 GO:0008759|GO:0009245
Pte12g00871 242 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 26 229 IPR004463 GO:0008759|GO:0009245
Pte12g00871 242 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 6 229 IPR004463 GO:0008759|GO:0009245
Pte12g00871 242 SUPERFAMILY Ribosomal protein S5 domain 2-like 25 146 IPR020568 -
Pte12g00871 242 Gene3D lpxc deacetylase, domain 1 24 150 IPR015870 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00871 9 228 Carbohydrate Esterase AT1G24793 56.364 1.24e-88 261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00871 12 10980544 10985762 Pte12g00871 12 10980544 10985762 RCT