Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00870 ATGTCATCATCTACCGCAACAGTCATGGAGGCGCCTGAATTGCACGCGCCGCTTCTACGACCTCGTCAAGGTGGAAACTCGGACTCCGGTTCGGCCCGCACACCGGTGCTATCTCTCATCTTGGGTCGTGTAAGTGGTCGGCGTGGGCCGTCCATGATGGTGAGGGAGACAGCAGCTCGCGAGCTAGAGGAACGAAGAGCTGACTGGGGTTACTCGAAGCCAGTGGTGGCTTTGGATATCACATGGAATATGGCGTTTGTGGTTGTAACGGTTGTGATGTTGATTTGTACGGCCAAGGAGGAGCCTAATACACCCATAAGGTTTTGGATCTGTGGGTATGGGTTGCAGTGTTTGCTTCATGTGGTGTTGGTATGGTTGGAGTATAGGATCAGGAATAGCAGTGAGATAAGGAGAAGAAGGTCTGTTGAAGATTTGGAAAGTCAAACTGGGTTGGGTGGTCAAGACGGAAATGACAGTGAGGAGCAGGATGAGAGTGGAAGCTCAGCAAGTTTTGTTCGTCCCGGATTCACTAAACGATGTGAATCAATCAATACAATGGTATCATTTATTTGGTGGATCATGGGTTTCTACTGGGTTGTCTCCGGTGGCGATGCCCTTCTGCAGCAAGCTCCACATTTGTACTGGTTGGCTGTGGTATTTCTTGCTTTCGATGTTTTCTTTGCTATCTTCTGTGTGGTTCTGGCATGTCTTATTGGGGTTGCCCTATGCTGTTGTTTGCCATGCATAATAGCCATTCTTTATGCTGTTGCGGGACAGGAAGGGGCATCAGAAGCAGATCTCAGTGTCCTTCCAAAATATAGATTCCGGTTATTAAGGAATGAGGAAAAGCCTAATGGAGGAGTGGGATCCATGGTTCCCATTGACACGAGCAGCGAGTACTTAGCAACTGAGCGTGTACTTCTACCGGAGGATGCGGAATGCTGTATATGCCTCGCCTCGTATGAAGATGGGGTCGAACTCCATACTCTTCCTTGCAATCATCATTTCCATTGCAGTTGCATCCAAAGATGGCTGAAAATGAATGCAACTTGTCCACTCTGCAAGTACAATATTCTCAAGGGAAATGAACAGATATGA 1098 0.4809 MSSSTATVMEAPELHAPLLRPRQGGNSDSGSARTPVLSLILGRVSGRRGPSMMVRETAARELEERRADWGYSKPVVALDITWNMAFVVVTVVMLICTAKEEPNTPIRFWICGYGLQCLLHVVLVWLEYRIRNSSEIRRRRSVEDLESQTGLGGQDGNDSEEQDESGSSASFVRPGFTKRCESINTMVSFIWWIMGFYWVVSGGDALLQQAPHLYWLAVVFLAFDVFFAIFCVVLACLIGVALCCCLPCIIAILYAVAGQEGASEADLSVLPKYRFRLLRNEEKPNGGVGSMVPIDTSSEYLATERVLLPEDAECCICLASYEDGVELHTLPCNHHFHCSCIQRWLKMNATCPLCKYNILKGNEQI* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00870 365 Pfam Ring finger domain 313 355 IPR001841 -
Pte12g00870 365 MobiDBLite consensus disorder prediction 1 33 - -
Pte12g00870 365 CDD RING-H2_PA-TM-RING 313 355 - -
Pte12g00870 365 SMART ring_2 314 354 IPR001841 -
Pte12g00870 365 PANTHER TARGET OF ERK KINASE MPK-1 44 363 - -
Pte12g00870 365 FunFam E3 ubiquitin protein ligase RIE1 294 362 - -
Pte12g00870 365 ProSiteProfiles Zinc finger RING-type profile. 314 355 IPR001841 -
Pte12g00870 365 MobiDBLite consensus disorder prediction 145 170 - -
Pte12g00870 365 SUPERFAMILY RING/U-box 300 359 - -
Pte12g00870 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00870 Pte-Chr12 10966851 10969817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00870 17 364 C3H Transcription Factor Family AT1G68070 67.529 7.87e-174 485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00870 12 10966851 10969817 Pte12g00870 12 10966851 10969817 RCT