Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00828 ATGTCAGTTGAGCAAGTTTCTGACGAACATACGGGGAACCCAGATGAAAAAATGGAATTTTGTGATAAGGGTATTGATCTTCTCAAGGAAACAATGAGGGTAACCGGTGACGGGGTTCAATCAAAATCGTCTAAAGTACGGAATTCAAGTCCTCAGGAGCCTCCTATCCGTTCCGATGATTCGAAGCTACCGGGTTTTCTAGAAAGAGAGGTGTCTGGTAAAAATTTGTTTAATTCTTTTGAAAAAATGAGTTATAAAGGGAAAGGAGTCATTTTTTCTGAGAATACAAATCCAGATGAACAGTGGGTGGAGAGAGATTTTCTCAGTTTGAGTGGTGGTGGAGGAAATTCATCAAAGAGAGCAGTTATAGAAGAAGATCAAGAGGTTGAAAGGCATAAAGATAAGGATAAGAAGCCGAAGTTAGAAACTCTGAATCTCTCTCTCTGTTTGCCTGATGTGTCTCTTTCTCTCACTGCTTCAAATAATCTGCAAAATAATGAATTGCCTGCTAGGCCAAGAGTTGAAACTCAGTCAGTGGATACAAAATGCATGCAGTCTGAGAATTTGAGAGAAATAGAGAGGGTTGATGTTGATAAAGTGAGAAAGATCTGTAGACCAGATAGAATTCTGAAAGAGATTATATCTCAGTCTTTACCTGTCATGTCTCAGTTCATTCAGGAGCTACCTGAAGAAGCAGTGGTATCAGTTAAGGAGTATCTGAAGGATATCATTGAAACACCTGAGAAAAAGGATGAACTGGTGAGCCTACAAAAATGCCTCGAGCGCAGATCTGATCTTACCAAAGAGGCTCTTTCAAAATGCGGTAGAGAGGGATTGGAAATTCTAGTTTCTATCAAGATGGGGCTTGCAAACTATTTGTCTAGAAAAGTTCAAATTTCGAGTGCAGATCTTTTGGAAGTTTTCTTGTTTATGAGATGTAGAAATCCCAACTGCAAGGTCGTATTGCCTTTTGATGATTGTGATTGCAAGATTTGTTCATCAAATAGGGGCTTTTGCAGTTCCTGCATGTGTCCTGTGTGTTTAAACTTTGATTGTGCAAATAACACATGCAGTTGGGTTGGTTGTGATGTTTGTTCCCATTGGTGCCACGCTGCTTGCGGCATTCACAAGAATCTGATCAGGCTTGGACCTAGCTTGAAGGGTCCAGCTGGAACCAGCGAGATGCAGTTTCATTGCATTGGATGTGGACATGCTTCGGAAATGTTTGGTTTTGTTAAGGATGTGTTTTTGTTTTGTGCAAAAGATTGGGCTCAAGAAGCTTTGATGAAAGAACTTGAATGTGTTAGGAGGATCTTCAAGGGAAGTGAAGACTACAAGGGCAAGGAATTGCATAATATAGCTGATGACATTCTTTTTAAGCTTCAAACTAAGATGACATCTGCTTCGAACGCATGCAACCTCGTCATACAGTTTTTCAACTATGCAGGCAGCACATCAAAATTTAGTGCTTCTGCAATGCCATCGAAGGAGTTGGTGCCAACTCAATCCAACCTTGGAAAGGATGTTGTTACACTAGCGCAAGCTAGTTACTTGTCACCTAATAGAGCTCATTATGAAGTCAGCTATCCAAGGTCACAAAGTGATTCACTGGCAAAGGACTTAAGAAGTACCATTTTGAGTGAAGTTAAGTCCAGAGATGAATTCCGGGTGGTAACTTCGCTAGAGAAAAGTGGATTTGATAGCTTGGAAACAATTGTAAAGATCAAGGAGGCTGAGGCAAAAATGTTTGAAGAGAAGGCAGAAGAAGCGAGAAGAGCTGCAGAAGGGTTCAAAAAGATGATCAAAACGAAGATGGACAAGCTGGAAGAAGAGTATGTTCAAAAGCTTGGTAAGTTATGCTTACAGGAGACTGAGGACAAGAGAAGAAAGAAATTGGAAGAGTTAAAGGTGTTGGAAAATTCTCACTGTGATTACTACAAAATGAAAATAAGAATGCAAGCTGAGATTGCCAGTCTTTTGGAGAGAATGGAAGCAACAAAACAAAAGTGGGTGTGA 2016 0.4028 MSVEQVSDEHTGNPDEKMEFCDKGIDLLKETMRVTGDGVQSKSSKVRNSSPQEPPIRSDDSKLPGFLEREVSGKNLFNSFEKMSYKGKGVIFSENTNPDEQWVERDFLSLSGGGGNSSKRAVIEEDQEVERHKDKDKKPKLETLNLSLCLPDVSLSLTASNNLQNNELPARPRVETQSVDTKCMQSENLREIERVDVDKVRKICRPDRILKEIISQSLPVMSQFIQELPEEAVVSVKEYLKDIIETPEKKDELVSLQKCLERRSDLTKEALSKCGREGLEILVSIKMGLANYLSRKVQISSADLLEVFLFMRCRNPNCKVVLPFDDCDCKICSSNRGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIHKNLIRLGPSLKGPAGTSEMQFHCIGCGHASEMFGFVKDVFLFCAKDWAQEALMKELECVRRIFKGSEDYKGKELHNIADDILFKLQTKMTSASNACNLVIQFFNYAGSTSKFSASAMPSKELVPTQSNLGKDVVTLAQASYLSPNRAHYEVSYPRSQSDSLAKDLRSTILSEVKSRDEFRVVTSLEKSGFDSLETIVKIKEAEAKMFEEKAEEARRAAEGFKKMIKTKMDKLEEEYVQKLGKLCLQETEDKRRKKLEELKVLENSHCDYYKMKIRMQAEIASLLERMEATKQKWV* 672
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00828 671 CDD PHD_OBE1_like 343 402 IPR047578 -
Pte12g00828 671 Coils Coil 573 600 - -
Pte12g00828 671 MobiDBLite consensus disorder prediction 1 65 - -
Pte12g00828 671 MobiDBLite consensus disorder prediction 9 30 - -
Pte12g00828 671 Pfam Coiled-coil region of Oberon 535 660 IPR032535 -
Pte12g00828 671 Coils Coil 621 641 - -
Pte12g00828 671 Pfam PHD - plant homeodomain finger protein 313 437 IPR032881 -
Pte12g00828 671 Coils Coil 649 669 - -
Pte12g00828 671 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 304 325 IPR004082 -
Pte12g00828 671 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 567 587 IPR004082 -
Pte12g00828 671 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 224 246 IPR004082 -
Pte12g00828 671 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 423 442 IPR004082 -
Pte12g00828 671 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 278 293 IPR004082 -
Pte12g00828 671 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 350 370 IPR004082 -
Pte12g00828 671 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 606 628 IPR004082 -
Pte12g00828 671 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 263 278 IPR004082 -
Pte12g00828 671 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 188 670 IPR004082 -
Pte12g00828 671 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte12g00828 Pte-Chr12 9553307 9557234 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00828 313 462 PHD Gene Family AT5G57380 24.503 1.67e-08 55.8
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00828 12 9553307 9557234 Pte12g00828 12 9553307 9557234 RCT