Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01520 ATGAAGCCAAACTTTGATCTTGAAGTGGAGGCATGTGTAGAATATGAGTCTGAGGTTAGCAGCCAAGTTGCTTCCAATTTATCTATTCAAGAAACCTCTACAGGTCCTTGCAGTGACAGCCTCACTAATATTTCTAGCATCACAAATCAAATAGGGGTTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAATAATGAGCCTGGGGGAAGAGATTCATTAGGATTCTCATTCTCAAGTACTAGTGAGAGCAGTAATGAACCTGCCTCCCAAACTACAGCAGCAACTGTTCCACGAGTTTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGTTCTCAGGCTCTTGGTGGACACCAGAATGCACACAAGAGAGAAAGGACATTAGCCAAAAGGGCCATGAGAATGGGATTTTTCTCTGAAAGGTATGCTAATCTAGCTTCTCTCCCTCTGCATGGTTCTTTCAGGTCCTTAGGCATAAAGGCACATTCTTCACTTCACCATGGTTTCTCATCAACAATGATGTCTCCTGAGATAAAAAACAACGCAAAATTAGATCAAGGGTATCTTGGCCTCCCAATATTCTTGGAGGAGGATGAGTCAGATTTGTTGTGGCCTGGTAGTTTTCGTCAGGTAGCCGAGGCAGGTGATAGTCATCAGAATTTCATACTTACTGGAAGTTCAAATTTGAGTTTTATTGGGGTGAATCCACCTGTAGAGATAGAGAACTCAACACCAGACTTGACTTTGAAACTTTGA 774 0.4186 MKPNFDLEVEACVEYESEVSSQVASNLSIQETSTGPCSDSLTNISSITNQIGVHPNSDAISLDLTLNFKNNEPGGRDSLGFSFSSTSESSNEPASQTTAATVPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYANLASLPLHGSFRSLGIKAHSSLHHGFSSTMMSPEIKNNAKLDQGYLGLPIFLEEDESDLLWPGSFRQVAEAGDSHQNFILTGSSNLSFIGVNPPVEIENSTPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01520 257 MobiDBLite consensus disorder prediction 77 98 - -
Pste8g01520 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Pste8g01520 257 FunFam Zinc finger protein 2 83 152 - -
Pste8g01520 257 Gene3D Classic Zinc Finger 84 151 - -
Pste8g01520 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 56 181 IPR044246 GO:0009788
Pste8g01520 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Pste8g01520 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01520 Pste-Chr8 8450779 8451552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01520 1 257 C2H2 Transcription Factor Family AT1G66140 43.816 3.31e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste8g01520 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01520 8 8450779 8451552 Pste8g01520 8 8450779 8451552 ECH
Pste7g01975 7 18020698 18021465 Pste8g01520 8 8450779 8451552 PCT