Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01518 ATGGTTTTGTCGTGGACAAAAGGGAGAGTATTCCGGCGTGCGAGGAAGGGCAAAGAGTTGAATTCCGGTGGCGATTTGGAGATAGAGATCGCGATTCCCACCCACTTCCGGTGTCCGGTAACATTGGACATGATGAAGGACCCCGTTACGGTGTCCACGGGGATAACCTACGACCGTGACAGCATCGAGAAGTGGATCGAGTCCGGCAACCGCACGTGCCCGGTCACCAAAACGGAGTTGAGCAGCTTCGACATGATCCCGAACCACGCCATTCGCAGGATGATTCAGGATTGGTGCGTGGAACACCGTTCCTACGGGATCGAACGGATCCCCACTCCTCGAATCCCGGTCACTCCGTACGAGGTAACCGACACGTGTACGAGGATCCTGTCGGCGGCGCAGCACGGGGACGAGAACAAGTGCGTGGAGTTGGTGAGGAAGATTAAGGCGTGGGGGAAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGCCAATGGTGCTGCTCTAGCGCTAGCTAACGCGTTCAACTCTTTCTCACGCGGGGTGGTTGAGAAGAACGTTGTTGTGTTGGATGAGATTTTGGGGGCTTTGGTTTGGATGCGTCCTCTTTCCGAAGAGGGTAGATCCGTGTTGGGGTCAGAGAGTTGTATTGCTTGCATGGTTTGGTTTATGAATGGTAAACAATTGTGTACGAGGCAGAACGCTGCATTGTTGCTCAAGGAAATGCGTGTTGAGGCGTTGCTGAAATGTGTGGAGGTTCTTGAGGCTTTGGTTACCATGATTAAGGGGCCTGTTGGGACTGGTTCCACTAAGGCATGTTTGTCAACCATTTTTAACTTGGTTAATTCTTCAGGGGTTAATAGAGGTGTGACTTGCCAAAGATTTGTGGAATTGGGTTTGGTTTCGCTCTTGTTGGAGGTTCTTGTTGATGCGGAAAAAGGGGTGTGTGAGAAGGCTTTAGGGGTGTTGGATTGCGTTTGTGATTGTAAGCAAGGCTTGGAGATGGCCAAGGCTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAACTGTTGAGAGTTTCTCCGTTGAGTTCAAGCTTTGCGGTTTCGGTTCTTTGGAAGCTTTGTGACAAGACAGAAGAAGAGGTGTTGATTGAGGCGCTTCAAATGGGGGTGTTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGGTGAAGGGACAAAAGAGAAGGCTACGGAGTTGTTGAAATTGTTGAATGGTTGCAGGAGCAAAGCTGAGTGTGTTGATTCCTCCTTGGATTTCAAGCATTTGAAGAACTCTTCTAATTGA 1311 0.4958 MVLSWTKGRVFRRARKGKELNSGGDLEIEIAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIESGNRTCPVTKTELSSFDMIPNHAIRRMIQDWCVEHRSYGIERIPTPRIPVTPYEVTDTCTRILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVANGAALALANAFNSFSRGVVEKNVVVLDEILGALVWMRPLSEEGRSVLGSESCIACMVWFMNGKQLCTRQNAALLLKEMRVEALLKCVEVLEALVTMIKGPVGTGSTKACLSTIFNLVNSSGVNRGVTCQRFVELGLVSLLLEVLVDAEKGVCEKALGVLDCVCDCKQGLEMAKANALTLPLVIKKLLRVSPLSSSFAVSVLWKLCDKTEEEVLIEALQMGVFHKLLVLLQVGCGEGTKEKATELLKLLNGCRSKAECVDSSLDFKHLKNSSN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01518 436 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Pste8g01518 436 SUPERFAMILY RING/U-box 28 108 - -
Pste8g01518 436 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Pste8g01518 436 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Pste8g01518 436 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Pste8g01518 436 CDD RING-Ubox_PUB 33 85 IPR045210 -
Pste8g01518 436 Gene3D - 125 424 IPR011989 -
Pste8g01518 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Pste8g01518 436 PANTHER WDSAM1 PROTEIN 29 423 IPR045185 GO:0061630
Pste8g01518 436 SUPERFAMILY ARM repeat 128 399 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01518 Pste-Chr8 8407977 8409287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01518 27 432 U-box Gene Family AT5G37490 46.135 5.70e-117 347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01518 8 8407977 8409287 Pste8g01518 8 8407977 8409287 ECH
Pste8g01518 8 8407977 8409287 Pste8g01518 8 8407977 8409287 PCT