Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02927 TGAAGAGGACACTTGTATTTCACTTTTGGTCTTGTTGTGAAGGCTCAACTCCCCTCTTTTATTGCCGAGTCCAATTGCATCATTTACTATGACTTGTATATCTCTCTCTCCCTCTCAAGTCTCTCTCTCTGATCCCATTGAAATTGATGGCAAGAGGAGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGGTTCTTTCCCCACAAACCAGTAGTTCTCAACTCTTTCCCTGAAGACGGTGTCAGCCAACAGAAGTGGAAAGTTGGTCCCAAAATGGATGCCACAGTTAGCAGAAAGAGGTCTCCATCATCCACTCCAATAAGCAACAGCAATAGCAACAGCGTCACTCCCAGTGGCACCAGCTCTACCATCCCCTTCCAAGTCAGCCTTACCTCTGATGACAAGAGGCCCCACATCGACGAGATGGACTTCTTCCCTAACAAGACCAACCACGATGACAACAACCTTGCCACTGCCTCTGCCTCTGCCTCTGTCTCCACCTCGCTTGACCACCTTCATCACACACACGATCATTCCTCCACTCCTGCTCTCTTGGAATTGAAAGTAAACACCGGTTTGAATCTTCTCACCACCAACACCGCCAGTGACCAATCCATGGTCGACGATGACATATCCCCTAATTCACTAGACAAAAGAGCTAAGACTGAGGTGGTTGCTCTTCAGGCCGAGCTTGAGAGAATGAAGGCCGAGAATCACAGGCTGAGGAACATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCAGATGCATTTGGTGACTTTGATGCAGGAGCACAAGGGTGAACATCAACAAGTCTTTGATGGAAAACTAGAAGAGAAACAAAGTGGGAGTGGTGGAGCCTTGGTGCCAAGGCAGTTTATGGATCTTGGGTTGGCCACTAATGCTGATACTAATGAGCCTTCGCTATCTTCATCCGTGGGAAGAAGTCAGGATCGGTCAAAGTCACCAACAAATAATTCAGAGGTCGCATCCAGGAAGAATGGGAGTGCTAGTGATGAAGGACTAGCGTTTGATCAAGACAAGAAGGAATTTGCTAGGGGAATTGACAGAGAGGACAGTCCCTCAGATCAAGGGATGCCTGCTAATAATAATGTTCCAAGGTTCAGTCCTCCAAGAAACGTTGACCAAGCCGAGGCCACCATGAGGAAGGCTAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCTATGATAACTGATGGCTGCCAATGGCGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCTTATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAACAATACTTATCACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCTGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCTAGAATGCTGCTTTCAGGATCAATGTCAAGTGCCGATGGCCTAATGAATGCAAACTTCCTCACAAGGACATTGCTTCCTTGCTCTTCTAGCATGGCAACTATCTCAGCATCAGCTCCATTCCCAACTGTTACATTGGACTTAACTCAGTCTCCAAACCCATTACAGTTCCCAAAGCCTCCAAGCCAATTCCAAATCCCCTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCCCCAGCCTCATTGCTGCCCCAGATATTTGGTCAGGCACTGTATAACCAATCCAAGTTTTCTGGTCTTCAAATGTCTCAAGATGCAGACCCTTCACAGTTGACAAACCAATCTCAACGGCCACCACCACAGCTTGCTGACACAGTTAGTGCTGCCACTGCTGCCATTGCAGCCGACCCCAACTTCACTGCAGCTTTGGCAGCAGCCATCACTTCCATTATTGGGGGTGCACAGCCAAACAACAATATTACCAGTACTAATAATAATGGCACCACGTCGACCAACACTAGCAACGGCAATATTACAACAAGCAATAACAAATAAAATCAACAATTCCAATTTCTCATGGAATTGAACTAGTCATATAGTTTTTTAGTTTACATATTATTCTTCCATTTTTTTTTCCTTTAATCTTTTGTTAGATTAATTTTATTTTTTCAAAGTAATTGAGCTCAAAATTTAAGTTGAGCTGAATACTGTTTTTATCTTTTACATTTGTTCAACTCAGGATATGTTATTATAAGACGGATAGTTGATATTCTTTTTTTTTTATATATATATATATATGTCCC 2242 0.4478 MARGGGLSIDSDPIGRFFPHKPVVLNSFPEDGVSQQKWKVGPKMDATVSRKRSPSSTPISNSNSNSVTPSGTSSTIPFQVSLTSDDKRPHIDEMDFFPNKTNHDDNNLATASASASVSTSLDHLHHTHDHSSTPALLELKVNTGLNLLTTNTASDQSMVDDDISPNSLDKRAKTEVVALQAELERMKAENHRLRNMLDQVNTNYNALQMHLVTLMQEHKGEHQQVFDGKLEEKQSGSGGALVPRQFMDLGLATNADTNEPSLSSSVGRSQDRSKSPTNNSEVASRKNGSASDEGLAFDQDKKEFARGIDREDSPSDQGMPANNNVPRFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPSQFQIPFPGVPQNFANSPASLLPQIFGQALYNQSKFSGLQMSQDADPSQLTNQSQRPPPQLADTVSAATAAIAADPNFTAALAAAITSIIGGAQPNNNITSTNNNGTTSTNTSNGNITTSNNK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02927 615 MobiDBLite consensus disorder prediction 584 615 - -
Pste3g02927 615 MobiDBLite consensus disorder prediction 254 334 - -
Pste3g02927 615 Pfam WRKY DNA -binding domain 359 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste3g02927 615 MobiDBLite consensus disorder prediction 532 553 - -
Pste3g02927 615 Coils Coil 169 203 - -
Pste3g02927 615 Gene3D WRKY domain 342 419 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste3g02927 615 SUPERFAMILY WRKY DNA-binding domain 350 418 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste3g02927 615 MobiDBLite consensus disorder prediction 316 330 - -
Pste3g02927 615 MobiDBLite consensus disorder prediction 49 82 - -
Pste3g02927 615 FunFam probable WRKY transcription factor 31 342 419 - -
Pste3g02927 615 ProSiteProfiles WRKY domain profile. 352 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste3g02927 615 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 143 594 IPR044810 GO:0003700
Pste3g02927 615 MobiDBLite consensus disorder prediction 295 313 - -
Pste3g02927 615 MobiDBLite consensus disorder prediction 85 100 - -
Pste3g02927 615 CDD bZIP 170 199 - -
Pste3g02927 615 SMART WRKY_cls 357 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste3g02927 615 MobiDBLite consensus disorder prediction 254 287 - -
Pste3g02927 615 MobiDBLite consensus disorder prediction 33 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02927 Pste-Chr3 22088841 22091590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02927 141 584 WRKY Transcription Factor Family AT1G62300 54.902 4.79e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste3g02927 WRKY 3.3e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02927 3 22088841 22091590 Pste2g02579 2 26006548 26009086 ECH
Pste3g02927 3 22088841 22091590 Pste3g02927 3 22088841 22091590 ECH
Pste3g02927 3 22088841 22091590 Pste1g03925 1 20216300 20221810 ECH
Pste3g02927 3 22088841 22091590 Pste1g03054 1 13610757 13613897 PCT