Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02675 TCAGAAGCAGTGATCCATAGGTCTCTCTTCTCTCTAGCAGCATGGACAATGGTTGCTTCTCTTCTTCACGCCATGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGAATCCTTGAAAAGATGCTAAAGAAGTGCTTGTATGAAGTGACAACATGTTGTTTAGCAATAGAGGCTCTGAAAAAACTTCGTGAGAGGAAAGATGCATATGACATCGTGATCAGCGATGTGAACATGCCAGACATGGATGGTTTCAAACTTCTTGAGCAAGTTGGACTCGAGATGGATCTCCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGAGTCCAACATGGAGCGTGTGATTATCTCCTGAAGCCTATAAGGATGAAAGAGCTTAGAAACATATGGCAACACGTCTTTAGAAAAAGGATGCATGAGGCAAGAGATTTTGAAAGTCATGACGGTTTTGAGGGCATTCACTTAATGAGAAATGGATCAGATCCGTCTGATGATGGTAACCTGTTTGCTGTAGAAGAAATTTCCTCAATGAAGAAAAGGAAAGATGCAGATAACAAACACGATGACAAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGAGTTGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTGAATCAAATTGGATTCGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCGTGGTTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCATGTGGAACAAAGCACTCGGATTCACCTTCAAAGGATCCAGGAAGTTTTAGTTTTTTAAACACTACAAACAAGCAACAAAATGATGTTACCATTGACATCTTCGGTTATTCAGATGGTACTTTACTACTTCAGATGGATGCTCCAAGTCATGCAGGTGATATGAAAGAAATTGTTTCAGAGCCTACAACTGAAAAAAGAAGAGCTTCCACTAATGACATTCCTGATCCCAAGATACAAAAAAGTTCAAAAATGAGCCTTAATCAACCTTTTGCATCTGTAGAGTCGTCAGAAACAAACCAAGCAGTTTTTGATTGCACCATACCAACACAGTACTCTTGGAGTGAGTTTCCAAAAGGTCCACTCAAAGAAGAACAGAAGACACTTGTTCAATTAGAGGGAAGCTTCAGCCAGTTTCCATTACATGGTAAAAAACATCACATTCAGGTTGATCAATCACAATCAATTGGCTCGATTAATTCTAATCCGTCTGTAACAGAAGAAGAGGTTGATGCAAGCTTGGAGACCAAACCTTTGTATGCTTACCAGAGTGATTATGTTAGTCCTGTGAGTTCAATAGGATCTGCAGTTGACACCTTCCCTAATCAGTCCAAAAGCCTTATGGTGAATGATCAATCTTCTGAGCCCATTTTCACCTCGAATTTAGGCTTGAAAACTCAGGGATTTAATCTAGATTGCATTTCTGATCTGGATTTTTACCAAAGGAACCTATTATTGGGTGGTGGGGCAGCTTCTGCACCTTTGGAGGAGGACTTGAATTTCTTTTTGCTACATGGTGAATGCTACAACATGAATTTTGGCCTGCAAAATATTGATATGTCAGAGTATTATGATCCAAGGCTCCACTTTTATGATTCAGCAGATTATTCATCGGTAGATCAAGGTCTATTCATAGCATGATCAGTCCTGCCTTACCCTTTTCGGCATCCTCAACAAAAATCCAACCAAATGCTAGAAAGGAAAATTTACTGTTTACTTTTTTTTTCCTTTCCCAAAATATCAACATTAGCGGGGGCTAGGGTATTCTTTTTTCCAAAAAGAAAGGATTTTGATATTGAAGCACAGATAAAAGTGGTGATGTGTGATGACAAACATTAAGCTTATCAATAATAAGCTTGCTTCCTTTAATATTAATAACTCAACATTTGGA 2013 0.389 MDNGCFSSSRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLAIEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHDGFEGIHLMRNGSDPSDDGNLFAVEEISSMKKRKDADNKHDDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSCGTKHSDSPSKDPGSFSFLNTTNKQQNDVTIDIFGYSDGTLLLQMDAPSHAGDMKEIVSEPTTEKRRASTNDIPDPKIQKSSKMSLNQPFASVESSETNQAVFDCTIPTQYSWSEFPKGPLKEEQKTLVQLEGSFSQFPLHGKKHHIQVDQSQSIGSINSNPSVTEEEVDASLETKPLYAYQSDYVSPVSSIGSAVDTFPNQSKSLMVNDQSSEPIFTSNLGLKTQGFNLDCISDLDFYQRNLLLGGGAASAPLEEDLNFFLLHGECYNMNFGLQNIDMSEYYDPRLHFYDSADYSSVDQGLFIA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02675 573 SMART REC_2 18 130 IPR001789 GO:0000160
Pste3g02675 573 MobiDBLite consensus disorder prediction 327 341 - -
Pste3g02675 573 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Pste3g02675 573 CDD REC_typeB_ARR-like 20 134 - -
Pste3g02675 573 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 318 IPR045279 GO:0009736
Pste3g02675 573 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Pste3g02675 573 MobiDBLite consensus disorder prediction 177 196 - -
Pste3g02675 573 Gene3D - 18 181 - -
Pste3g02675 573 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pste3g02675 573 MobiDBLite consensus disorder prediction 262 289 - -
Pste3g02675 573 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Pste3g02675 573 SUPERFAMILY CheY-like 17 142 IPR011006 -
Pste3g02675 573 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Pste3g02675 573 Gene3D - 197 259 - -
Pste3g02675 573 MobiDBLite consensus disorder prediction 327 351 - -
Pste3g02675 573 FunFam Two-component response regulator 196 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02675 Pste-Chr3 19669166 19676864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02675 12 266 Response Regulator Gene Family AT2G25180 54.545 4.38e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pste3g02675 Response_reg 6.5e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02675 3 19669166 19676864 Pste3g02675 3 19669166 19676864 ECH
Pste7g02364 7 22348977 22352846 Pste3g02675 3 19669166 19676864 PCT