Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g02279 CCCCATCCCTTTCTTTCTTTCCTCTCTCTCTCTAATGTCTTCTTCTACAGACCTTACCAATTATCGCTCCTCCATTCCCATTGCCAAAGCACACTGAAACACAAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGAGGGGGAGGGAGAGCCTTCTTCAACCACCCTTCTGTTCGGTTCCACAATGTCGCATTCGTCGGGGAAGCCGGTTTCCGAGGTTGTCGCCGATCGGTTCCGCGACGTGCTCAGCTGCGACAACAACACCAACAAGCCCGACTTCCGAGAGCTCGATCTGGGCTCTCCGGTCTCGCCATTGCGGACCACGCGCGCCCCCGCCGCCAGTACAAGTTCCAGCTCCTCCGGTTCGTTCTCGGGCCGAACCGGACCCAACTCGCTTCCCCGAAAGCCCGAATCGGCTCAAAACAACCACACCAATAACAACAACTCCGGCGAGCTCTCTGGTTCCAGCGAGAACAGTCCAACTGCAAGAGGGTTCAAGCCGGGTCACGCGAGATCCGACTCCGGATCCGCGCCGGCGCCGTTGATATACTCCGGCCAGACGGCGACTTCTCCGGCCATGAACGTGCTCCCCACCGGAAACATTTGTCCCTCCGGTAAGATCCTGAAGACGGGGATGGCGGCGAATCGGAGTAGTAGAAGCGATGTTTTGGGGTCAGGGATGGGGAACTACGGCCACGGTAGCATAATGCGTGGCGGCGGGAAGGCGGAGCCGGTGAGTTCTCGCAGCGGTGGTGGCAATGAGGCGGTGAGGAGAGTGGGCCACTTGCAGGGTGTCGATCCGGAGGAGTTGAAGAGAGCAGGGAATGAGTGTTACAAAAGGGGAAATTTTGCTGATGCGTTGAGTCTATATGATCGTGCGATTGCGATGTCGCCGGCGAGTGTCGCTTACCGGAGCAACCGTGCTGCGGCGCTGACGGGACTGGGACGGTTGGGTGAGGCTGTGAGGGAATGTGAGGATGCTGTGAGGTTGGATCCTAATTATGGGAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTTTGTTATCCTGGGATGCAGCCAGATCTGTCTGAGATGCAGAGGTTGCAAGTGGTGGAGAAGCATATCAGCAAATGTGGTGATGTACGGAGGGTAGCGGATTGGAAGGGTGTTCTCAGGGAGGTTGATGCTGCTGTTGCTGCTGGGGCAGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCTTTTTGAAGCTCCATCAGATTGATGATGCAGAATCAATTTTGTTTCATATTCCCAAATCGGAACCACACTCTAGTTCCTCTTCTCAGGCTAGATTTTTTGGGATGCTTGCTGAGGCATATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTCGAGAATGCAGTTACAGCTGCTGAGAAAGCCAGTCAGATTGATCCCAGAAATGTTGAAGTTGCTGTTTTGCTTAACAATGTTAGGATGGTGGCAAGGGCCCGAGTTCGTGGCAATGATCTTTTTAAATCTGAAAGGTACACTGAAGCTTGCTCAGCGTATGGAGAAGGTTTGAGATTGGATCCTTCGAATTCTGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAGTGGGAAAGATCAATTGAAGACTCCAACCAAGCTTTACATATTCAACCTAATTACACGAAAGCCCTTCTTCGGAGGGCTGCATCAAATAGCAAGATAGAAAGGTGGGAGGAAGCAGTCAAAGATTATGAGGTCTTGCGTAGAGAACTTCCAAATGACAATGAAGTTGCTGAGTCTCTTTTCCATGCACAAGTTGCTCTAAAGAAATCACGTGGGGAGGAAGTATATAATTTAAAATTTGGTGGTGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCATCTAGCTCACAATGCAAACAAATATCACCATTTGTTGATACACTATGTGGTCGATATCCATCAATTAACTTCCTCAAGGTGGACATTCAAGAAAACCCAACTGTTGCAACGGCAGAGAATGTTAGGATTGTACCAACCTTCAAGATATACAAAAATGGCAACCGAGTGAAGGAAATTGTATGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTT 2220 0.5 PHPFLSFLSLSNVFFYRPYQLSLLHSHCQSTLKHKHRERERERERGEGEGEPSSTTLLFGSTMSHSSGKPVSEVVADRFRDVLSCDNNTNKPDFRELDLGSPVSPLRTTRAPAASTSSSSSGSFSGRTGPNSLPRKPESAQNNHTNNNNSGELSGSSENSPTARGFKPGHARSDSGSAPAPLIYSGQTATSPAMNVLPTGNICPSGKILKTGMAANRSSRSDVLGSGMGNYGHGSIMRGGGKAEPVSSRSGGGNEAVRRVGHLQGVDPEELKRAGNECYKRGNFADALSLYDRAIAMSPASVAYRSNRAAALTGLGRLGEAVRECEDAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGMQPDLSEMQRLQVVEKHISKCGDVRRVADWKGVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAESILFHIPKSEPHSSSSSQARFFGMLAEAYSYFVRAQIEMALGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKIERWEEAVKDYEVLRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASSSQCKQISPFVDTLCGRYPSINFLKVDIQENPTVATAENVRIVPTFKIYKNGNRVKEIVCPSRDMLEHSVRHYSF 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g02279 740 MobiDBLite consensus disorder prediction 108 163 - -
Pste3g02279 740 Pfam Thioredoxin 645 731 IPR013766 -
Pste3g02279 740 Pfam Tetratricopeptide repeat 461 493 IPR019734 GO:0005515
Pste3g02279 740 Gene3D Glutaredoxin 633 739 - -
Pste3g02279 740 MobiDBLite consensus disorder prediction 86 186 - -
Pste3g02279 740 CDD TRX_family 645 732 - -
Pste3g02279 740 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 87 737 IPR044534 -
Pste3g02279 740 Gene3D Tetratricopeptide repeat domain 266 626 IPR011990 GO:0005515
Pste3g02279 740 Pfam Tetratricopeptide repeat 275 334 - -
Pste3g02279 740 MobiDBLite consensus disorder prediction 30 70 - -
Pste3g02279 740 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Pste3g02279 740 SMART tpr_5 268 301 IPR019734 GO:0005515
Pste3g02279 740 SMART tpr_5 540 573 IPR019734 GO:0005515
Pste3g02279 740 SMART tpr_5 574 607 IPR019734 GO:0005515
Pste3g02279 740 SMART tpr_5 460 493 IPR019734 GO:0005515
Pste3g02279 740 SMART tpr_5 302 335 IPR019734 GO:0005515
Pste3g02279 740 SMART tpr_5 506 539 IPR019734 GO:0005515
Pste3g02279 740 SMART tpr_5 412 445 IPR019734 GO:0005515
Pste3g02279 740 SUPERFAMILY TPR-like 268 496 IPR011990 GO:0005515
Pste3g02279 740 MobiDBLite consensus disorder prediction 54 69 - -
Pste3g02279 740 ProSiteProfiles TPR repeat profile. 460 493 IPR019734 GO:0005515
Pste3g02279 740 FunFam TPR repeat-containing thioredoxin TTL4 632 739 - -
Pste3g02279 740 SUPERFAMILY Thioredoxin-like 543 738 IPR036249 -
Pste3g02279 740 ProSiteProfiles TPR repeat profile. 540 573 IPR019734 GO:0005515
Pste3g02279 740 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g02279 Pste-Chr3 15973239 15976474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g02279 505 650 U-box Gene Family AT3G07370 27.322 1.56e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g02279 3 15973239 15976474 Pste3g02279 3 15973239 15976474 ECH
Pste3g02279 3 15973239 15976474 Pste1g04052 1 22877373 22881577 PCT