Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00176 ATGGAGAGAGATTTCATTCTCAACTCCAAAGAACCACTATCTCTCCTGAGAGAGGAGATCAACAATGATGGCTGCAAAGACTCTGGCATACACGTAGATAGATTTTCATATAGATTACTAGGCTTCACAAAAGGTTCAATTGCACAGTGGCCCTTTTCGAACAAAGTATCAGCCCTTCCACATTTGATGTCATTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATAGTGTCTGATCCCTTAACATCTCCCGGATTTATATCTATCTTTAGTCAAGATGCATTTGACTCTAGTCAGAAACGCTCTGCGGGTGAACCCCAGAAATCTTTCAATCACGATGGGCAAGGTGGCCTTCATTTTTCGCTGACTCCATATCCTGTACAACATTATATGAATTCTGTGAATCCTCCTCATGATGTGAAGATGTTTTCAGTTCCCAATCAAGCAATTTCATTTTCCTTGGGGAATCCATTCCTGAAGAATCATTTTGCAACTGCTGGTCAGAATATGAATGGCACAAATGTGAAGCAGCCATTACTCGGGGGAATACCTGTTACGATGCCTCATTCAGTTATTCCCTCTGTTGGTGCCGTTGGTGGAATGAGTGAATCATGTGTGAAACTTTCACCACCTTCTGCCCAACTTACCATCTTCTATGCTGGTACTGTCAATGTCTTTGATGATATCTCTGCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGCAATAGCTTATCTGCAGCTTCTAACAAGGTGCAGCCAAAAGTTCAGGTGCCTGTCTCTAAGTCGGCTGCCGGTGAAGCTGTGCCTGTGAGTCAACCTGCAAATACACCACCCGGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCGTATACTGGTGCACAATCAGGGAGTGGCTCAACTTGCACTGATGAATTTCTGGCTGCTAAAACAACTGGAGTTTCAACCACTCTTGTTAGCAATGCTGAGCCTCCTAAGGTGGTCCATGCAACCACTATGTTGACATCTGCTGTACCACAGGCTCGGAAAGCATCGTTGGCTCGTTTTTTAGAAAAACGCAAAGAAAGGGTGATGAGTGCAGCACCATATAACCTGAACGAGAAGTTTGAAGAGTGTGCCACTGCAGAATATGCTGGTGCTAACTTTTCTGCAGTTACTTCTACCAATACTGTCTCAGCCAAGCTAGGATAGTGGCCCCGCACCTTTAGGAAACTATCTCAGAAAAATATTGTTGTAACCTAAAAATGTTGTAAGCACATGATTTTATTTTCGTTGATCACAACTTATGCTGACATTGTCAAGTACCAGACTACGTTCAGCACATAGATAGGTCACTACCATAATTATTTTTGTGGTGTAGGGCTTTTACCTTGTTATTTGAAAGGTTGGTTGAATTTTAGCTTCCTACACTGTAACATTGTACCACTATGTAATATGATTTGTTTAATTTTGTGGAGTAATAGCCCCCAGTTTAGAT 1480 0.4223 MERDFILNSKEPLSLLREEINNDGCKDSGIHVDRFSYRLLGFTKGSIAQWPFSNKVSALPHLMSFKASQDDKTKKIVSDPLTSPGFISIFSQDAFDSSQKRSAGEPQKSFNHDGQGGLHFSLTPYPVQHYMNSVNPPHDVKMFSVPNQAISFSLGNPFLKNHFATAGQNMNGTNVKQPLLGGIPVTMPHSVIPSVGAVGGMSESCVKLSPPSAQLTIFYAGTVNVFDDISAEKAQAIMLLAGNSLSAASNKVQPKVQVPVSKSAAGEAVPVSQPANTPPGSGLSSPLSVSSYTGAQSGSGSTCTDEFLAAKTTGVSTTLVSNAEPPKVVHATTMLTSAVPQARKASLARFLEKRKERVMSAAPYNLNEKFEECATAEYAGANFSAVTSTNTVSAKLG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00176 397 SMART tify_2 208 243 IPR010399 -
Pste3g00176 397 MobiDBLite consensus disorder prediction 265 289 - -
Pste3g00176 397 Pfam Jas motif 340 364 IPR018467 -
Pste3g00176 397 Pfam tify domain 209 242 IPR010399 -
Pste3g00176 397 MobiDBLite consensus disorder prediction 274 289 - -
Pste3g00176 397 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 151 372 IPR040390 -
Pste3g00176 397 ProSiteProfiles Tify domain profile. 208 243 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste3g00176 Pste-Chr3 759396 762946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00176 50 369 Tify Gene Family AT3G17860 35.294 8.52e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pste3g00176 tify 2.9e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00176 3 759396 762946 Pste3g00176 3 759396 762946 ECH