Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00171 CTTAAAGGGTGTGAAGTCAACTGGAATCAGTCATTGTTGTCTTGTGTTGTGTGCTTTCCTTTACACAGAGCAATGGACGACATGAAAGATAAGGTTAAAGGGTTCATGAAGAAAGTCAACACACCTTTCTCCTCTAAATCATCCTCCAATTTCAAGGGCCAAGGTAGAGTCCTCGGTTCTTCTTCCACACCCGCTAATTCCAATCTTCCCCCCAATACTACGCTCAACCCTAATTCCAAACCCACTTCCTCTGCATCCCTTCCCAAACCCTCGCCTCAGAAAACGGACAACATTTCTAGCTCCCACAAGCCTCGCCAAAACGATGCCTTTGACCCCTTTGATTCTTTCGTCACTAATTCCAATAGATCGCAAAATGGCTATTCACTCAACCTGTATGAATGCCCCATTTGCCAACAACCCTTTAGATCCCAAGACGAGGTCTCTACACACGTGGATTCTTGTTTGAGTGATCCTCTCGATGATCAAAATCGGGTACCAGAGACTGAGCTTGGGTCTACTACTAATAGTGAATTGCAGGTTTCTGTTGGGACATACATTTCAGGGAAGCCATCTGAGGGATCGGTTGATGTTCTTCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTGAAGTTTAGGAGGATCAGGATGAGCAATCCCAAGATAAAAGAGGCTGTTGCTGATGTTGCTGGGGGAGTTGAATTGCTCAGTTTCTTGGGGTTTCAACTTAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCCACACAGGAGCAAATAAAATTCATTAAGCAAGCAATAGTGTTGCTCGAATCGCAACTTGTACAACAAGTACCCCCAAAGAGAGAGGATTCATCTACAACTTCTTCTGAGATGGCTGCAAAGGCTAAATCAAAGCCAGTTGACAGACAGGTGAAGGTATTCTTTGCTGTCACTGAAAGTGTTGCAGCTAAAATTAAGCTACCAGATTCTTTCTATAACCTTTCACCTGAAGAGGTCAGAAGGGAAGCTGAGTTAAGAAGAAAAAAGATCGCAGATTCTCAGCTTTTAATACCTAAGTCACTTAAAGAAAAGCAAGCAAAATCTTCCAGGAAGAGATACAACAAAACTGTTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTACTGCTCTCTACGAGTTTGTCAGCTCCGCATTGAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTGCTTATCCAACGACGCGTGATCCCTCATTTTCCAAAAGCAGGGGAAAAGACTAACACAATAGAGGAAGAGGACCTGGTACCTTCTGCTCTAATCAAATTCAAGCCCCTGGAAACTGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTTCTTGAAATCAGTGAACCACTTGTGTAAATGCTTAAGCATATGGTTTATACTTTTCCATAGTTTTTTTATTAAGAGTTTAATATTTATACATTTATAGTGAAAAATCATAACCTG 1524 0.4206 MDDMKDKVKGFMKKVNTPFSSKSSSNFKGQGRVLGSSSTPANSNLPPNTTLNPNSKPTSSASLPKPSPQKTDNISSSHKPRQNDAFDPFDSFVTNSNRSQNGYSLNLYECPICQQPFRSQDEVSTHVDSCLSDPLDDQNRVPETELGSTTNSELQVSVGTYISGKPSEGSVDVLLKLLRNIGREPENVKFRRIRMSNPKIKEAVADVAGGVELLSFLGFQLREENGETWAVMEVPTQEQIKFIKQAIVLLESQLVQQVPPKREDSSTTSSEMAAKAKSKPVDRQVKVFFAVTESVAAKIKLPDSFYNLSPEEVRREAELRRKKIADSQLLIPKSLKEKQAKSSRKRYNKTVIRIQFPDGVVLQGVFAPWETTTALYEFVSSALKEPGLEFELMHPVLIQRRVIPHFPKAGEKTNTIEEEDLVPSALIKFKPLETDSVVFTGLKNEFLEISEPLV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00171 454 SMART PGNneu 169 236 - -
Pste3g00171 454 MobiDBLite consensus disorder prediction 16 93 - -
Pste3g00171 454 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 453 - -
Pste3g00171 454 Gene3D - 339 432 - -
Pste3g00171 454 Gene3D Classic Zinc Finger 104 134 - -
Pste3g00171 454 MobiDBLite consensus disorder prediction 1 93 - -
Pste3g00171 454 SUPERFAMILY Ubiquitin-like 317 429 IPR029071 -
Pste3g00171 454 ProSiteProfiles UBX domain profile. 345 429 IPR001012 GO:0005515
Pste3g00171 454 Pfam PUB domain 168 243 IPR018997 -
Pste3g00171 454 Pfam UBX domain 345 395 IPR001012 GO:0005515
Pste3g00171 454 SUPERFAMILY PUG domain-like 167 251 IPR036339 -
Pste3g00171 454 Gene3D - 163 249 - -
Pste3g00171 454 CDD PUB 162 252 - -
Pste3g00171 454 FunFam Plant UBX domain-containing protein 2 163 249 - -
Pste3g00171 454 FunFam UBX domain-containing protein 6 339 430 - -
Pste3g00171 454 MobiDBLite consensus disorder prediction 128 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00171 1 377 C2H2 Transcription Factor Family AT2G01650 53.671 8.73e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste3g00171 UBX 1.2e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00171 3 735883 740817 Pste3g00171 3 735883 740817 ECH