LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g00131	TAGAACGGGATTGGGTATGGGTATGGGTAGCGGGGTGAGGCAGTTGCGTCCGCTAACGTACGCGGCATCGGCGTCGGCGTCGGCGTCACGAGTAGTGCCCCAGCCAGTGGACCTCATAAAATGGGTGAGGAGAGAAGGTGGGTTGGTCCACCGCGCGGTGAAGATAGCAGAACTGGACTCCTCCAACGGACTGGGCCTAGTGGTTAGGGAAGAAATTCCACGTGGCACTGACCTTATTGTTCTCCCCCACCACCTTCCCCTGCGCTTTCCCTCTCTCCAACAACACCCTTCGCTGCATCACCTGGCTCGCCATGTCCCTGATGAACTATGGTCAATGAAGCTGGGTTTGAAGCTTCTTCAAGAAAGGGCTAAAATTGGATCCTTCTGGTTCCCCTATATAAGCAATCTCCCATTAACATACACTCTCCCTATTTTCTTTCCTGGGGACGACATCAACAACTTGCACTATGCTCCTCTTCTCCATCAGGTAAACAAAAGATGTCGGTTTCTTCTCAATTTTGAGCAACAAGTCAAGCGTGCCTTAGTAAGTCTTACACCAGATATGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCTGTCTCATCAAGAGCATTCCGGTTATATGCTGAAAAGGATCCTAGTGGAACACTCATTGACGTACCCATGATGCTCCCTCTAATTGATATGTGCAATCACAGTTTCAATCCAAATGCTAAAATTGTTCAGGAACAAGATACAAGTAGCATGAATATGCAAGTTGTGGCTGAGACAGCTATCAAAGTAGACGATCCTTTGTTACTTTGCTATGGCTGTTTCAACAATGATATTTTCCTTCTTGATTATGGATTTGTGGTACACTCAAACCCTTATGATTGTATTGAGCTCAAATATGATGGTGCCCTTTTGGACGCCGCAAGCATGGCAGCTGGAGTTTCGTCACCAAACTTCTTGGCACCTGCTCCATGGCAAGAACTGATTTTATCTCAGCTGAATCTAGCTGGAGAAACTCCAGATCATAAGGTGAGCTTGGGTGGTCTAGAAACAGTAGATGGCCGCTTGTTGGCTGCATTGAGAGTACTCCTTTCAAGTAACATGGAAACTGTGCAGAAGTATGACCTCAGCACACTCCAGTCTTTAGATGCTGAGACTCCACTTGGTGTTGCAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGTGTCATTGCACTGGGACACTTTCCCACGAAAATAATGGATGATGAATCACTGTTGAAGCAGGGGGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATCTGTGATTATAGACGTAATGAAAAATCTCGCAAGGAGAGTAAAGCTGCTATCATCGAAGGAAATAGCAACTGCCGAAGGCTAAGAGATAGCGAAAAATTAGCTATTTGCTTGCTATCAATTGTCATGAATCTCCTCCCCTTTTTATTCTCCTTCTGCTATATTTACCATCTTACTGGAGTGTGTAATTTTGATTGAATTTACCTATGTTCACCGTTTGGCAATCTTTAATTGAACTGTAAGC	1582	0.4513	MGMGSGVRQLRPLTYAASASASASRVVPQPVDLIKWVRREGGLVHRAVKIAELDSSNGLGLVVREEIPRGTDLIVLPHHLPLRFPSLQQHPSLHHLARHVPDELWSMKLGLKLLQERAKIGSFWFPYISNLPLTYTLPIFFPGDDINNLHYAPLLHQVNKRCRFLLNFEQQVKRALVSLTPDMHPFGGQEVDASSLGWAMSAVSSRAFRLYAEKDPSGTLIDVPMMLPLIDMCNHSFNPNAKIVQEQDTSSMNMQVVAETAIKVDDPLLLCYGCFNNDIFLLDYGFVVHSNPYDCIELKYDGALLDAASMAAGVSSPNFLAPAPWQELILSQLNLAGETPDHKVSLGGLETVDGRLLAALRVLLSSNMETVQKYDLSTLQSLDAETPLGVANDIAVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKSVIIDVMKNLARRVKLLSSKEIATAEG	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g00131	468	Pfam	Rubisco LSMT substrate-binding	323	443	IPR015353	-
	Pste3g00131	468	FunFam	Histone-lysine N-methyltransferase setd3	1	286	-	-
	Pste3g00131	468	SUPERFAMILY	SET domain	32	291	IPR046341	-
	Pste3g00131	468	SUPERFAMILY	RuBisCo LSMT C-terminal, substrate-binding domain	283	462	IPR036464	-
	Pste3g00131	468	CDD	SET_LSMT	47	287	-	-
	Pste3g00131	468	FunFam	SET domain containing protein	309	462	-	-
	Pste3g00131	468	SMART	set_7	46	279	IPR001214	GO:0005515
	Pste3g00131	468	Gene3D	-	324	463	IPR036464	-
	Pste3g00131	468	Pfam	SET domain	58	273	IPR001214	GO:0005515
	Pste3g00131	468	Gene3D	set domain protein methyltransferase, domain 1	6	286	-	-
	Pste3g00131	468	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	31	433	-	-
	Pste3g00131	468	ProSiteProfiles	SET domain profile.	46	273	IPR001214	GO:0005515

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pste3g00131		SET	3.3e-09	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g00131	3	567874	570332	Pste3g00131	3	567874	570332	ECH