Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pste3g00109 AGAGCAAAGGCGCTCTGTGGTTACTCTTTGTTTCAACTACAGTTATGCGTTTCTCTCTATAGCCAGACAGCCATCATATAATGTCATCGCCAAACACCGCCCATCAGCCCCGCGCGCCGCTCCTTCTCCCGCGTCCGGATGCCGCCGCCCGCCTTCCAGTCCTGGCCCTCCTCCTCGGCCGCCGCGGCCACTCCGCCATGGTCCGAGAGACGGCGGCGCATGAGCTGGATGAGCGCCGCGCCGACTGGACCTACTCCAAGCCGGTGGTGGCGCTGGACATGACATGGAACATGGCCTTCGTGGTGGTCTCGGTGGTCATGCTCGCCTGCACCGTCAAGGAGAAGCCCAACACGCCGATCCGGTGGTGGATCTGCGGCTACGCGCTGCAGTGCCTTGTCCACGTGGCCCTCGTCTGGCTCGAGTATCGCAGGAGGAGCGACGCGCCCAGGGATGAGGAATCTGGTGGCAACCTCGATTATGACGACAGCGAGGACGACGACGTTGGAACCTCCCGGAGTTCCTCTACCGCCGGTACTACTGCTCAGCTCTACCCTGGTTCACTTGGATTTGTCACTATTTTTCAAAACTGCAAATCTATGGTTGAATTTCAGTTTAATGCCAAAATAAAGAGTATTCAAACTGATTGGGGGGGTGAGTTCAGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTGATTGGAATTGCCCTATGTTGTTGTTTGCCCTGCATTATTGCTGTTCTCTATGCTGTTGCGGGACAGGAGGGTGCATCAGAATCAGATCTCAGTATACTTCCAAAATTCAGATTTCAAATTTTAAGTAATGAGGAAACACCCAGTGAGGGAGGTGGATCAATGATTCCTATGGAGACCAGCAATGACTCCTTGGCGAATGAACGATTGCTTTCACCTGAGGATGCTGAATGCTGTATATGCATCTCTTCCTATGAGGATGGAACAGAACTTCATGTTCTTCCTTGTAACCATCATTTTCACTCTACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTTAAGGGAAATGAACAGGTGTGACAGAATACTAAAGACAATCAATGATATAATAATATCAAGCTGAGCTTAATTATAAAACAGCTCTGGGTTTTCAACTGCTGATGTGTATATGTAGATAATATCTAGACATGAAGCAATAGAACTTGTCCCTATTTTCTCGGTTTAGCTGTCATTGTTTTGCTTAATTGCTTCTGTAGAGAAAAGGTAGAGGTAAGAGGGAAAGCTGCTTATAGAGATCTAGTATTTATTTTGAATAAGTTAACGATTTCATTTGACCCTTATTTGTCCTTTATTAGTCATTTGATAGTTGTCCTGTTTCCTGTATCAAATTTGTTCATATGGGAGAAAACAATGCAAACTGTGGCAATCTAACTTTCCGCATTTTCATGAGTGTATTAGTGGATTCTTTCTTTGTTTTTTGGTAG 1519 0.4628 MSSPNTAHQPRAPLLLPRPDAAARLPVLALLLGRRGHSAMVRETAAHELDERRADWTYSKPVVALDMTWNMAFVVVSVVMLACTVKEKPNTPIRWWICGYALQCLVHVALVWLEYRRRSDAPRDEESGGNLDYDDSEDDDVGTSRSSSTAGTTAQLYPGSLGFVTIFQNCKSMVEFQFNAKIKSIQTDWGGEFRLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAVLYAVAGQEGASESDLSILPKFRFQILSNEETPSEGGGSMIPMETSNDSLANERLLSPEDAECCICISSYEDGTELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 344
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pste3g00109 344 FunFam E3 ubiquitin protein ligase RIE1 273 341 - -
Pste3g00109 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 342 IPR013083 -
Pste3g00109 344 SUPERFAMILY RING/U-box 281 338 - -
Pste3g00109 344 Pfam Ring finger domain 292 334 IPR001841 -
Pste3g00109 344 CDD RING-H2_PA-TM-RING 292 334 - -
Pste3g00109 344 MobiDBLite consensus disorder prediction 121 151 - -
Pste3g00109 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Pste3g00109 344 SMART ring_2 293 333 IPR001841 -
Pste3g00109 344 PANTHER TARGET OF ERK KINASE MPK-1 33 342 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pste3g00109 Pste-Chr3 468591 476235 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste3g00109 1 343 C3H Transcription Factor Family AT1G68070 58.757 2.41e-142 405
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g00109 3 468591 476235 Pste3g00109 3 468591 476235 ECH