Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g04052 AACCTGTCTCGTGAAGCTGCAGGTGAAGCTTAAGCAAAAGAAAATAAAAGCTCACCTCTCTTTTCTTTTCGTTCTTTCTTTCTCGCTCTCTCTCTCTCTCTCTCTCTGCATAGCTTTCCACACTTCAGAACCCAACACACAACACCCCATTTCTCTCTCTCTCTAACATTCCTTCTTCACTTTCACGAGATCCCCATCACTCCCTCTCTGCATTGCCGCTTCCAATTCGCAGAGAGAGACCGAAAAATCAGAAATTGAAGAGAGAGAGGGAACAAAGGTTGAGTCTTTAAGATACCCATCTTGCTGTTTCGGTTACTGAGACGAAGAGGAGGAAAAAGGGGTGCAGAAAAATGTCACATTCCGGGAAACCCGCGAACGAGTTAGGTCGACTCAGCGAACGATTCCGCGACTCAGTGAGTTGCTCCGACGACAACAACAAGCCCGATTTCCGAGAACTCGGTTTGGGTTCTCGTTCTCCCGTTTCCACATTGCGTCCGCAGAACCCCCAGAGCGCGGCCACGAGCAGCAGCACGAGCACCAGTAGTGGGTCGACCGGGTCGGGTTCGGGCCGGAAAGGAAACAGTTCGGTTCCGAGGAGATCCGATTCCGGCGAGTTATCTGGGTCGAGTGAGACTAACAGCCCGACCCGAGCATCGAAACCGGGTCATCGGAGAACGAATTCCGGCCAGAGTAATCGATCTCCGTCTTTGTCGTCCTCCGCCGCCGTGAATTCTCCGCCGTTGAATGTTCTCCCTGCGGGGAACATCTGCCCCTCTGGGAGGGTTCTCAAGGCGGCGACAACGGCGGCGGCGGCGGGCAGGAGCTCCAGGACGGATGTGTTGGGCTCCGGCACGGGGAATTACGGTCACGGCAGCATAATGCGGGGTGGGAAGGGTGGCGGCGGCGGCGGCGATGCGGCGAGTGTGAGGATCGTCGGCGATTCCGTGAAGCGAATGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTATAAAAGAGGGCACTTTTCTGAGGCGTTGAGTTTGTATGATCGGGCAATTGCGATGGCTCCGGGCAATGCTGCTTACCGGAGCAACCGTGCCGCGGCGTTGACCGGGTTGGGCCGGCTGCCCGAGGCAGTGAGGGCATGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAATGCTGTTTCTCAGGTTAGGACAGGTTGAGGATGCTAGGAAGCACCTTTGTTATCCTGGGCTACAGCCAGACCCTGCTGACTTGCAGAAGTTGCAAATAGTGGAGAAACATATTGGCAAATGCACGGATGTAAGGAGGATACGAGATTGGAAAAATGTATTGAAGGAGGTTGATGCTACTGTTGCTGCTGGAGCAGACTCCTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCTACACCAGATGGATGATGCTGAATCATGTTTATCGGGGATTCCCAAAAATGAACCACGTCCTGGTTCCCTATCACAGGCAAGATTTTTTGGGATGTTTTCTGAGGCTTATTGCTACTTCGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGTGGAGAAAGCTAGTCAGATTGACAACCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCTAGAGCGCGATTGCGTGGCAATGATCTTTTTAAATCAGAACGGTTCACCGAGGCATGCTCGGCATATGAGGAAGGGTTGAGGCTCGACGCTTCAAGCTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGACAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTAAGCATCCAACCAAATTACACAAAAGCCATTCTTCGAAGGGCCGCCTCTAATAGCAAGCTAGAGAGGTGGGAAGAAGCAGTAAAAGATTATGAGTTTTTGCGGAGAGAACTACCAGATAACAATGAAGTTGCCGAAAATCTGTTTCATGCACAAGTAGCATTAAAGAAATCTCGTGGGGAAGAATTACATAATTTAAAGTTTGGTGGCGAAGTGGAGGACATATCGAGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCCAACGTGCAATGCAAGCAGATATCGCCATTCGTGAATGCACTATGTAGTCGCTATCCGTCTATTAACTTCCTCAAGGTGGATATTCAAGCATGCCCCACAGTTGCCACCGCCGAGAATGTCAGGGTTGTTCCAACTTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATCAGGCATTACAGCTTGTAGAACTCTTGACCTTGTAGTGCTTCTGATGTATACTGCATTTCTACCTTGCTGTCCGAACATGCCGTGAAACTCTCCTCCATTCATTCAGTCTTGTGATCCCCTCATAAAATTGTCTCTTGATACCTGTGACATATTCAGAAACCACATAATCTTGTTAGCAGCCAGTGCCAGTGGAACCAGCACATAATCTAGTTCCTTTTGCAGTTTTTATTTATTCATTCATTCCTAATTGCTCTCTGGTTCCATGTTCCTCAACTTTCCCTTTGTCAATTTTCTTTCTCATCTTTTTTCAGTTCATGTAGACCATCTGTTCTTGTATCCCCAGTTTCCTTTTGGGTGAAGAAAAGGGAAATTTTTATGTCTGTACAATTGATTAAATTGTTAGTTTTTATATTTACCTTTAAGATAGATAGACAAAAGGGATAGGAGGTTGGTCTGCTGCTAGAAGAGGATTCTGTACATGTATATATGTGTTGATTATATACCAAACACTGGAAGCCTTAAAAAGGGGGATAGGATGAGTGGTGGGTACCTAATGGGTTGGTTGGTGAAATGAGGATGAATATGTTGTTATTGTTATTATTTTTCTGTCTTAGCCATTTAATCAATAAAATTTCCCATTTTTTC 3008 0.4721 MSHSGKPANELGRLSERFRDSVSCSDDNNKPDFRELGLGSRSPVSTLRPQNPQSAATSSSTSTSSGSTGSGSGRKGNSSVPRRSDSGELSGSSETNSPTRASKPGHRRTNSGQSNRSPSLSSSAAVNSPPLNVLPAGNICPSGRVLKAATTAAAAGRSSRTDVLGSGTGNYGHGSIMRGGKGGGGGGDAASVRIVGDSVKRMDPEEVKRMGNEEYKRGHFSEALSLYDRAIAMAPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLAMLFLRLGQVEDARKHLCYPGLQPDPADLQKLQIVEKHIGKCTDVRRIRDWKNVLKEVDATVAAGADSCVQLFMCRAEALLKLHQMDDAESCLSGIPKNEPRPGSLSQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAVEKASQIDNRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYEEGLRLDASSSVLYCNRAACWFKLGQWERSIEDCNQALSIQPNYTKAILRRAASNSKLERWEEAVKDYEFLRRELPDNNEVAENLFHAQVALKKSRGEELHNLKFGGEVEDISSLEQFRAAISLPGVSVVHFETASNVQCKQISPFVNALCSRYPSINFLKVDIQACPTVATAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g04052 676 Gene3D Glutaredoxin 568 675 - -
Pste1g04052 676 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 23 673 IPR044534 -
Pste1g04052 676 MobiDBLite consensus disorder prediction 154 168 - -
Pste1g04052 676 ProSiteProfiles TPR repeat profile. 204 237 IPR019734 GO:0005515
Pste1g04052 676 MobiDBLite consensus disorder prediction 10 34 - -
Pste1g04052 676 MobiDBLite consensus disorder prediction 1 128 - -
Pste1g04052 676 SUPERFAMILY Thioredoxin-like 479 674 IPR036249 -
Pste1g04052 676 Pfam Thioredoxin 581 668 IPR013766 -
Pste1g04052 676 Gene3D Tetratricopeptide repeat domain 202 562 IPR011990 GO:0005515
Pste1g04052 676 CDD TRX_family 581 662 - -
Pste1g04052 676 FunFam TPR repeat-containing thioredoxin TTL4 568 675 - -
Pste1g04052 676 MobiDBLite consensus disorder prediction 43 128 - -
Pste1g04052 676 ProSiteProfiles TPR repeat profile. 476 509 IPR019734 GO:0005515
Pste1g04052 676 Pfam Tetratricopeptide repeat 398 427 IPR019734 GO:0005515
Pste1g04052 676 SUPERFAMILY TPR-like 204 432 IPR011990 GO:0005515
Pste1g04052 676 MobiDBLite consensus disorder prediction 153 188 - -
Pste1g04052 676 Pfam Tetratricopeptide repeat 478 509 IPR001440 GO:0005515
Pste1g04052 676 SMART tpr_5 204 237 IPR019734 GO:0005515
Pste1g04052 676 SMART tpr_5 396 429 IPR019734 GO:0005515
Pste1g04052 676 SMART tpr_5 442 475 IPR019734 GO:0005515
Pste1g04052 676 SMART tpr_5 238 271 IPR019734 GO:0005515
Pste1g04052 676 SMART tpr_5 476 509 IPR019734 GO:0005515
Pste1g04052 676 SMART tpr_5 510 543 IPR019734 GO:0005515
Pste1g04052 676 Pfam Tetratricopeptide repeat 210 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g04052 Pste-Chr1 22877373 22881577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g04052 441 586 U-box Gene Family AT3G07370 27.869 2.69e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g04052 1 22877373 22881577 Pste1g04052 1 22877373 22881577 ECH
Pste3g02279 3 15973239 15976474 Pste1g04052 1 22877373 22881577 PCT
Pste1g04052 1 22877373 22881577 Pste3g02643 3 19363763 19367218 PCT