Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03925 CTTTCTTCGTTTTCTTCCTTTTGTGTTTTGGTGACACATTCTTCATAGCAAATATCACAACCTAGAGAGAGAGAGAGGAGAGAGAAAGTGCATTCAAAAGACATATTTGCCCTTCGATCTTCTTCGTCTTCCTCTCTCTCCCACCATGAACGAGAAGGCCAACGTTTCCAAAGAACTCAACGCTAAACACAAAAAGATACTGGAAGGACTTCTAAAACTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTCATATGCATGCAGTGTTCTGGAATACACAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCTCAAATTATGATAGAGTTGGAATTGAAAATTTCATCCGCGCAAAGTATGAAGATAAAAGATGGGCTGCAAGGGGTGAAAAACCAAGATCACCTTCTAGTTTGCGAGAAGAGAAAAGTCCTCCACATTGGCAAAAACCTGTGGAAAGAGGTGGACATAGTTATGCAGCTGTATCTGAGAATACTTTTGAGGAAAGCAAGAAAACCCCACCATCAAATGCAATCCCTGCTGCAAGAATTAGTGTTCCTGCTCCTCCCAAAGGGCCTGAGCTGGTAGCTCCTGTGGCAAAACCTCAACATGTTGAGAAAGCAGAATTTGTTGCACCACCACCACAAGCTGAAACTTCAAAACAGACTGCTGACACAACACAAAATTCCCCTCCAAAAGTTGATTTTTCTACGGACCTTTTTGACATGTTATCTATGGATGGTCCAAATGAAACGGGCTCAGGGGCAGCTGATGCCAATGCAGATGATAATAATTGGGCAGGTTTTCAGTCTGCTGTAGAGGCATCAACAGCCGAGAAGACTGATGTCGCAAAAGAAGTTGAGAATAGACCCCAGTCCACTTCTGCAATTGAGGATTTATTTAAAGACTCACCTTCGGTTACACCAAGTTTAACTCCGGAAAAACCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGACAAATATGGTGTCTCCATTTGCAATGCATCAACAGCAGCTGGCCATGCTGGCGCAGCAGCAGTCTCTTCTAATGGCTGCTGCCACTAAATCTGCTGCTGGGGATGCCAAGTACCTGGCCAGCTTACAACAGCAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAAATCTGCTGGTGGGGACTCCAAGTATCCGGCCAGCATACAACAACCAGGGTCCAATATTCCTGCCCAAAGTTGGCCTGCAGCTGGCTACCTAATCCCAGGTGCAATGCCCATGGGTAGTCAGGAAGAATTGCAGAAACTCATGCAGACAATGAACATGACTGCAGCACATTCAGCTGGGAGTTCAGTTCAGCATCCACCATCTAGTCCCCATGGCATAGGACAAATTTCTTCAGTTAATGGTACGACAACAACCGGAGCTAGTAAACCTCAGTCAGCATCTCCGGTATCATCAAACTCTTCAAAGACAGGGAACGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCAAAACACTGATTGGCCTTTGCCTAACATTCCTGGCTGTCATATACAATAGAAGATTAGTTAAAATTACAGAAAAGTGCACCTTCTTTTCTCTTTTCCTTTACCCCTTTCCTTGGGTTGTAAACCATTTCTACAGCTACTGAGCTAGTTCAGTTTTCTTGTTTCGGGTGATTGCTTCATTTGTATCCATAAGTGTATTCACAATAAAATTTAGTCATATTATTTATATTCCTTTTCTTTTTCTCTTTTATATTTTATGTAATGCAAGTGTTCAGTCTTTCATGTCAATTCCCCTTATAATTGTATAAACATAATTCGTC 1959 0.4262 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPSNYDRVGIENFIRAKYEDKRWAARGEKPRSPSSLREEKSPPHWQKPVERGGHSYAAVSENTFEESKKTPPSNAIPAARISVPAPPKGPELVAPVAKPQHVEKAEFVAPPPQAETSKQTADTTQNSPPKVDFSTDLFDMLSMDGPNETGSGAADANADDNNWAGFQSAVEASTAEKTDVAKEVENRPQSTSAIEDLFKDSPSVTPSLTPEKPQKDVKNDIMSLFEKTNMVSPFAMHQQQLAMLAQQQSLLMAAATKSAAGDAKYLASLQQQQSLLMAAAAAKSAGGDSKYPASIQQPGSNIPAQSWPAAGYLIPGAMPMGSQEELQKLMQTMNMTAAHSAGSSVQHPPSSPHGIGQISSVNGTTTTGASKPQSASPVSSNSSKTGNDYDFSSLTQGMFAKH 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03925 501 CDD ArfGap 19 117 - -
Pste1g03925 501 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Pste1g03925 501 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Pste1g03925 501 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pste1g03925 501 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pste1g03925 501 MobiDBLite consensus disorder prediction 212 230 - -
Pste1g03925 501 MobiDBLite consensus disorder prediction 209 230 - -
Pste1g03925 501 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 364 IPR044520 GO:0005096
Pste1g03925 501 Pfam Putative GTPase activating protein for Arf 17 124 IPR001164 GO:0005096
Pste1g03925 501 MobiDBLite consensus disorder prediction 273 292 - -
Pste1g03925 501 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Pste1g03925 501 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Pste1g03925 501 MobiDBLite consensus disorder prediction 123 151 - -
Pste1g03925 501 MobiDBLite consensus disorder prediction 123 146 - -
Pste1g03925 501 MobiDBLite consensus disorder prediction 436 501 - -
Pste1g03925 501 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Pste1g03925 501 MobiDBLite consensus disorder prediction 436 493 - -
Pste1g03925 501 SMART arf_gap_3 16 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03925 Pste-Chr1 20216300 20221810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03925 16 118 C2H2 Transcription Factor Family AT4G05330 50.450 2.82e-29 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03925 1 20216300 20221810 Pste1g03925 1 20216300 20221810 ECH
Pste2g02579 2 26006548 26009086 Pste1g03925 1 20216300 20221810 ECH
Pste3g02927 3 22088841 22091590 Pste1g03925 1 20216300 20221810 ECH
Pste1g03054 1 13610757 13613897 Pste1g03925 1 20216300 20221810 ECH