Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03542 GAAGAATTAAAAATGTCTACATATGAACAGCTCCTCACAGCACATTCCCAACTTCCAAGTCTCTGCGAATAAAACGTTATATTCCAACCTCTCAAACTCTCTCTCTCTCCCCCTCCCATTCTTGTTCATCACTCTTCTCTCCTATAATATAATAATACATCACACACAAAACACAACAACAGTCGTAGACAAGTAGCCAGAACAAGAAATCCTTTGATACATTAATCACTTTAAGGAAACAAACATGGGAGGGAGTCACATGGGCTGGTTCCTCTTGTGTTGTTGTGCTCTCATGGCTTCTTCTGTCTCACCCAGAAACTTGCCCATCATAGCCTTTGAAGATGGCTACACACCCTTGTTTGGGGACCATAATTTGGTCATCCATAGGGATGGAAAATTAGTTCACCTTTCACTTGATGAAAGAACAGGTTCTGGATTTGTGTCTCATGACCTTTACCTTCACGGGTATTTCAGTGCCTCTATCAAGTTGCCTTCTGATTATACTGCTGGAGTTGTGGTTGCATTTTATGTGAGTGATGGATTTTACGTGGAAGATGTTCCGATTAGGGAAGTTAAGAGAACAGAATCTATGGGAGGAGATTTCCCCTCAAAGCCAATGACTCTGTATGCCACCATATGGGATGCATCTGATTGGGCAACCAATGGAGGCAAATACCGGGTAAATTACAAGTATGCACCCTATGTTGCTGAGTTCTCTGACCTTGTCCTGCATGGTTGTGCAGTTGATCCCATTGAGCATGTGGCCAAGTGTGACAGTGCCCAAGTTTCTGAGGCAGTTCCTTCTGGTGTCACCCCAGTACAAAGAACCAAAATGGTAAACTTCAGGTTAAAGCACATGACATACTCTTACTGCTATGATACAGTTAGATACAAGGTCCCTCCACCTGAGTGTGTCATCAACCCCCAAGAAGCTGAAAGACTAAGGAAATTTGATCCTGTCACCTTTGGCAATGGCCGCCGCCACCATGGAAAACGACACCATCGTGGTGGTAGAGGAAGCCAGCAAGAAATTGCTTCTTCATTTTAATGTATGGATCCATATGCAGATTTTGTCATAAAGGAAATATATTTTCATCATTGAATCAGTTTGATTTACCCGTCTTAACAATATATCTTTGGATTAATGGTGTTTTTAGTCCTTGAAAAATGGGTGTTTTTTATTTTAATCGTTATTATTAAAATCATGAGTTTTGGCCCCTATTGTTTGAAACTTGAGTTTGAGTATTTAAAATATATAGGACCAAAACTCAACAATTTAAAAGTAAAGGACTAAAATATAAGAGAACCTAATTTTTCAGGACTAAAAACATCATTAACTTTATATTTGTTTTCCTTTATCCTTTCATTTTGGTATATATAGAAAGAGAAGGGTTTGGACATAGAAGTCCTTAATATGATAGTTTATGATATGATTCTTGCTTCTGAGTTGCTGTATAGTCCTCTTATCATTCCTTTAGGTCCCAGCCCAGGTATTTTATCATTGATGTCTTATGCTACCTTACAAGTTGAACCTCTTGATGATTTATGTATTTAGACACTCATCAGGGTTTCGATAACCTATTTACTTATCAGGATGAGTTAATTCATGAGTGTTAGGTATGAATTATTTTTGTGTTGTTATGCCACATCCAATATGAAACCAACCAAAATGATTTTATATTTAGTCCATGACTGTACTGAAGTGTGTTGGACTGTCTGGAAAATTACATGGTCAGATTTGTCAGCTTGAGGACATAAAATGTGGCTATTTTGTCAAGGTAATTGGAATCCAAAGTCAAGTCTTGAATGTGACAAATGCTGCAGGCTGGTTTGTTTACTGGTGCTTTCATTAAATAGTGTGACCAAAATTTCTCTCTCCACTTTTTCTTTCCCATGCTTTTGTCTTCTGGCACATAGTTGGGAATTTCAAATGGGCAGTTGGGATCTCTAAGGTACAACATTGGGAGTGGTTAGTGGTTATTGGCCTCTTATCCTGTTGTACTGTCTCTATATCAAAGAAAAGCATACAAGGA 2033 0.3851 MGGSHMGWFLLCCCALMASSVSPRNLPIIAFEDGYTPLFGDHNLVIHRDGKLVHLSLDERTGSGFVSHDLYLHGYFSASIKLPSDYTAGVVVAFYVSDGFYVEDVPIREVKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPIEHVAKCDSAQVSEAVPSGVTPVQRTKMVNFRLKHMTYSYCYDTVRYKVPPPECVINPQEAERLRKFDPVTFGNGRRHHGKRHHRGGRGSQQEIASSF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03542 267 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 227 IPR013320 -
Pste1g03542 267 MobiDBLite consensus disorder prediction 239 267 - -
Pste1g03542 267 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 30 97 IPR044791 GO:0004553
Pste1g03542 267 Gene3D - 100 223 - -
Pste1g03542 267 Gene3D - 17 99 - -
Pste1g03542 267 Pfam Glycosyl hydrolases family 16 34 98 IPR000757 GO:0004553|GO:0005975
Pste1g03542 267 Pfam Glycosyl hydrolases family 16 100 149 IPR000757 GO:0004553|GO:0005975
Pste1g03542 267 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 187 223 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pste1g03542 267 PIRSF EndGlu_transf 100 228 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pste1g03542 267 PIRSF EndGlu_transf 3 99 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03542 Pste-Chr1 16728725 16732293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03542 17 99 Glycoside Hydrolase AT1G14720 66.265 1.13e-34 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03542 1 16728725 16732293 Pste1g03542 1 16728725 16732293 ECH