Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03364 GAAAGATTAAAGGAGAGAAAGAGTGAGTGAGGTGGCGAAGTGAAGTGAATTAATTAATGAAAGAAGAATGAGTTAAGATTGTGTGGCCATATCTATTAATATCTTTCCCTCCCATCGTTCTAAGCTCTAAATTTTGTGTTTGGGTTTGGCACCTTTCCTATTCATTGGCCTCGCCTCACTGGATCCGCCATTTTCCTCTCCCTTAGGGTTTCCGCTATGCTCACTCTCCCTCTCTCTCTCTGACTCCTCCCGCTTTCTATGGCTCCCGCTGCGCCCGATTTTCCGGTCGGCCTCCGAGTCCTGGTCGTCGACGACGACGCCACCACGCTCAAGATTATCGAGCAAATGTCCCTTCGCTGCCGTTACCGCGTTACCACATGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGAGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGTTATAAACTCCTTGAACATGTTGGACTGGAAATGGACCTTCCAGTAATTATGATGTCTGCTGATAGTACAACTAGTGCTGTCATGAAAGGAATCAGACATGGGGCTTGTGATTATTTAATTAAGCCTATACGTGAGGAAGAACTAAGGAATATATGGCAGCATGTTGTTAGGAAAATCTGGAATGAAAATAAAGAACATGATCATTCTGGCAGCATGGAAGACAGTGATCGGAATAAACGAGGGAATGATGATGCCGAATATACTTCTTCTGTCGCTGACGTAGCAGAAGTAGTTAAACCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAACTACATCTAAAAAGCCCCGTGTAGTATGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTAAATCAACTTGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAGTTGATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGAGCAACAGAATGGGATGCTAAATGCAGTTCCTGGGACTATAGAATCAAAGCTGGGTGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCTCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCTCCCAGCGACTAACATAATGTCTCCGTTGGATCAGACTACCCTACTACAAGCATCCATACAGGGGCTAAAACATTCCCATGCTGAACATACTGTAGCATATGGTCAGCCTCTTGTAAAGTGTGCTTCCAACATTGGGAAAAATTTCCCTCCATCTATCTTAACTGTAAATGGTACATCATCAGGATATGGTGGATGGCCATCACCTAATAACACTATTGGTTCAGTGAGACCCAATAATAGTGTTGAAAGGGTGGGTATTCAGAATAACAACATGCTGATGGATATATTAGAGCACCAACAAAGGCAGTTACCCCATCAAAAACAACAGCAACAGATGCAGCAGCACCAGCAAAAACAACTGCAACATCTGCCACGGCAGTCACTGATAAATGATCAAAGTTGTTCAATCAATGTTCAACCATCGTGCTTGGTGGTTCCCTCTCAATCCACTGACACTTTCCTGGCAGTAAATAGTCCTGCTTCTGTCAATCAGGATTGCAGTTTTGGTAGGAATGCCATAATTGATTACAGTCTATTGCCACAAAAGTCAAATAATTCATTTTGTGCATCTCAATTTCCTGGTGGGGACACAAAGGCTCGAGGTGTTATCTATAGGTATACTACATCCTCCAATTGTTTAACTGGCTCCAGCAATGGCAATCAACTTCAAAACTCAACTTTGACATTTGGTGCTGCAAGACCTTTGCCTAGCCTTTTGCCCATGTCTGGTAGACAAGATCCTTATGGTTTTAAATTAGGTGATTCACTTGATCAAGCATGCGTTAAGAATCTTGGGTTTGTGGGCAAAGGTACCTGCATTCCAAGTAGGTATATGGAAAATGAAATTGAATCATCTGTAAGTGAATTCAGTCAGATGAAAGTCAATGTAGATAGCACTGGTGACACATTGAAGGGGGAGCCAAATTTTATAAATATTCCAAAAGTAAGCCACCCAATCATAGAAAGATATCCTTCTCGTGGTCATTCAAGCATTTTCACTGAATAGGTAAGTTGAATATTTCTTTGTGTCTTATGTTCTATAAGATTGTGAATATTAGTTTAACTACATGGTTAGTGATTTGAATATTATATATTATTGGGGCTTAATGTAAGTATAATGATGATTATATCTATCTTAATAAATTTCTTCTTTAATAAAAACAGAAGAGTTGTATGGTTCCGA 2361 0.4113 MAPAAPDFPVGLRVLVVDDDATTLKIIEQMSLRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADSTTSAVMKGIRHGACDYLIKPIREEELRNIWQHVVRKIWNENKEHDHSGSMEDSDRNKRGNDDAEYTSSVADVAEVVKPPKKRSSLKEEDIELESDDPTTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVEQQNGMLNAVPGTIESKLGATGRFDIQALAAAGHVPPETLAALHAELLGLPATNIMSPLDQTTLLQASIQGLKHSHAEHTVAYGQPLVKCASNIGKNFPPSILTVNGTSSGYGGWPSPNNTIGSVRPNNSVERVGIQNNNMLMDILEHQQRQLPHQKQQQQMQQHQQKQLQHLPRQSLINDQSCSINVQPSCLVVPSQSTDTFLAVNSPASVNQDCSFGRNAIIDYSLLPQKSNNSFCASQFPGGDTKARGVIYRYTTSSNCLTGSSNGNQLQNSTLTFGAARPLPSLLPMSGRQDPYGFKLGDSLDQACVKNLGFVGKGTCIPSRYMENEIESSVSEFSQMKVNVDSTGDTLKGEPNFINIPKVSHPIIERYPSRGHSSIFTE 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03364 641 Pfam Myb-like DNA-binding domain 198 246 IPR001005 -
Pste1g03364 641 SUPERFAMILY CheY-like 11 135 IPR011006 -
Pste1g03364 641 SMART REC_2 12 124 IPR001789 GO:0000160
Pste1g03364 641 FunFam Two-component response regulator 12 149 - -
Pste1g03364 641 Gene3D - 12 147 - -
Pste1g03364 641 FunFam Two-component response regulator 192 255 - -
Pste1g03364 641 MobiDBLite consensus disorder prediction 137 158 - -
Pste1g03364 641 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Pste1g03364 641 CDD REC_typeB_ARR-like 14 128 - -
Pste1g03364 641 NCBIfam myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677
Pste1g03364 641 Gene3D - 192 255 - -
Pste1g03364 641 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 411 IPR045279 GO:0009736
Pste1g03364 641 SUPERFAMILY Homeodomain-like 193 253 IPR009057 -
Pste1g03364 641 MobiDBLite consensus disorder prediction 169 194 - -
Pste1g03364 641 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 252 IPR017930 -
Pste1g03364 641 MobiDBLite consensus disorder prediction 137 194 - -
Pste1g03364 641 Pfam Response regulator receiver domain 14 123 IPR001789 GO:0000160
Pste1g03364 641 MobiDBLite consensus disorder prediction 408 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03364 Pste-Chr1 15475428 15479699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03364 46 406 Response Regulator Gene Family AT3G16857 46.907 1.41e-91 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pste1g03364 Response_reg 6.4e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03364 1 15475428 15479699 Pste1g03364 1 15475428 15479699 ECH