Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g03054 TTGTTGCCGAGTCCATTGCATCGTTTATAAAGACTTGACAGACTTCTCTCTCTCTCTCTCTCTTGGAATTTATGGTTAGAGGAGGTGGACTCTTTATGGATTCAGATCCAATTGGGAGCTTCTTCTTCCACAAGCCAATTGTTCTAAACTCTTTCCCTGAAGACACAAAGACAAACCACCCCAAGTGGAAACTTAGTCCCCACAAGATGGACGAAGACACCATCCCCTTCCAAGTCAACCTTAGCTCTTCTCCTTCCTCTCTCCACAACACAACCGAGATGGACTTCTTCTCCGACAACACCACCAAAGATGACAACGTTCCTGCCTCTTCCCCTCTCCCCGACAATCATCATCATCCTTCCCCAGATTTCCAAGTAAACACTGGTCTCAATCTTCTTACTGCCAACGCTAGCAGCGATCAATCTAGGTCGGATGCTGGGATATCACCCAATTCAGAAAACAAAGGAGCTAAGAATGAGCTGGCTGTTCTTCAAGCTGAGCTGAAGCAAATGAAAAGGGAGAATCAAAAGTTGAGGGACACGCTTGATCAGGTCAATACCAATTACGACGCGCTTCAGACGCATTTCACGATTTTGATGCAGCAGCAGAAGGCCGAAGAAGTTGAAGAACAAGAAGTGTTTGGTGGAAAGTTAGAAGAAAAAAAGCAAGGTGGGGTGTTGGTGCCAAGGCAGTTTATGGATCTCGGATTGGCTACTAATGCTGACACTGATGAACCCTCGTCATCGTCAGGGGGAAGAAGTCAAGATGGATCAGGATCACCCAACGTGGAAGTGGCTTCCAAGGAATTAGGGACTAGAAAGAATAATGTTAATGATGAAGGAGTTGTGTATGACCAAGAGAAAAAGGAATATGGTAGAGGGGTTGAAAGAGACGATAGTCCCTCAGGTCATGCTTTTTCTGGTGATAAAGTTCCAAGGTTTAGTCCTCCAAAGAATAATAATGTTGATCAGGCTGAGGCCACCATGAGAAAAGCTAGAGTTTCAGTTAGAGCTCGATCAGAAGCACCCATGATTACTGATGGATGTCAATGGAGAAAGTATGGGCAGAAAATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGATGTACCATGGCAGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGATAGAACAGTCCTTATCACAACCTATGAAGGTAATCACAACCACCCTTTGCCTCCAGCAGCTATGGCAATGGCGCAAACCACTTCCTCAGCCGCAAGAATGCTTCTTTCTGGGTCAATGTCAAGTGCTGACAGCCTAATGAATGCAAATTTCTTCACAAGGACACTCCTTCCTTGCTCTTCAAGCATGGCTACTATCTCTGCATCTGCTCCATTCCCAACTGTCACATTAGACCTAACTCAATCTCCAAATCCGCTACAGTTCCCAAGGCATCCAAACCAGTTACAAATTCCCCTCCAAGGTGTTCCTCAGAATTTTGCAAACTCCCAAGCATCTTTAATGCCTCAGATATTTGGACAAGCACTTTACAACCAATCAAAGTTTTCAGGCCTTCAAATGTCACATGATGCAGACCCTTCACAATTTGGTAACCACTCTCAGCAGGTTTCACCACACCTTGCTGACACAGTTGGTGCTGCCATTGCCACTGACCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTAGTGCTCAGCAACACAACAACAGTGATAATAGTAACAATAATGGCAATATGACAGCCAGCAATAGCAATGCCAACGGCAACATCACTAGTAGCAACAACAACAACTGCAACGGAAAGCAATAAAATCAGCAATTCCAATAGGGAATTAGTTGACCCCTTTCAAAAATTTTTATGAGATTAATTTAATTTGATTAACTTAAGTTGATTTTATTATCTTTCTATTTGTTCATTTGTTTTTTATTTGATATTCAGGAAAGCGTTACTATTTGACATAGATAATTTTTTATTGGCCTATACTTTATATCAGTTTTTATCTCCCTCAGTAGTTTGCTGGAAACTGTATACAAAAACAAACAGAAATTTTACATATCAC 2076 0.4263 MVRGGGLFMDSDPIGSFFFHKPIVLNSFPEDTKTNHPKWKLSPHKMDEDTIPFQVNLSSSPSSLHNTTEMDFFSDNTTKDDNVPASSPLPDNHHHPSPDFQVNTGLNLLTANASSDQSRSDAGISPNSENKGAKNELAVLQAELKQMKRENQKLRDTLDQVNTNYDALQTHFTILMQQQKAEEVEEQEVFGGKLEEKKQGGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDGSGSPNVEVASKELGTRKNNVNDEGVVYDQEKKEYGRGVERDDSPSGHAFSGDKVPRFSPPKNNNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSLMNANFFTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRHPNQLQIPLQGVPQNFANSQASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGNHSQQVSPHLADTVGAAIATDPNFTAALAAAITSIIGSAQQHNNSDNSNNNGNMTASNSNANGNITSSNNNNCNGKQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g03054 584 Gene3D WRKY domain 306 383 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste1g03054 584 ProSiteProfiles WRKY domain profile. 316 382 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste1g03054 584 MobiDBLite consensus disorder prediction 217 238 - -
Pste1g03054 584 MobiDBLite consensus disorder prediction 549 584 - -
Pste1g03054 584 MobiDBLite consensus disorder prediction 57 134 - -
Pste1g03054 584 FunFam probable WRKY transcription factor 31 306 383 - -
Pste1g03054 584 Coils Coil 130 171 - -
Pste1g03054 584 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 118 560 IPR044810 GO:0003700
Pste1g03054 584 MobiDBLite consensus disorder prediction 57 85 - -
Pste1g03054 584 Pfam WRKY DNA -binding domain 323 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste1g03054 584 MobiDBLite consensus disorder prediction 97 134 - -
Pste1g03054 584 MobiDBLite consensus disorder prediction 215 297 - -
Pste1g03054 584 MobiDBLite consensus disorder prediction 256 280 - -
Pste1g03054 584 SMART WRKY_cls 321 381 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste1g03054 584 SUPERFAMILY WRKY DNA-binding domain 314 382 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g03054 Pste-Chr1 13610757 13613897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g03054 69 557 WRKY Transcription Factor Family AT1G62300 50.098 1.15e-127 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste1g03054 WRKY 4.3e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g03054 1 13610757 13613897 Pste2g02579 2 26006548 26009086 ECH
Pste1g03054 1 13610757 13613897 Pste1g03054 1 13610757 13613897 ECH
Pste1g03054 1 13610757 13613897 Pste1g03925 1 20216300 20221810 ECH
Pste3g02927 3 22088841 22091590 Pste1g03054 1 13610757 13613897 PCT