Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste1g02976 ATGTCAGATCTTTTCACTCTCTCATATCATCACCATATGTTGTTTTTCTCCAATTTTGTTGAACCATTTTCACTGCTGCAGGCACCATCCATGCCTCCAAGTTTCAACACACTAGACTATTCCCTAGACCAACACCATCATAATAATTTGTATCAACCAAATCAACATCTCATGAAGTTCCAAGGTGATGAGATTAATGGATCAATGGTGGATTACATGCCTCAAACACCACCTCCACCGCCACCTCCACATGGTTTTTATGGTGCTACTAGTGCTGGCACAACACCCTATGAGAAGCTGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAGTTGGCTTTGAACCAGAAAAACTGTGAGGAATCTGGGATAGACCCGGTTTATTTTCTCAAGTTTCCTGTGTTAAATGACAAGATGGTGGAGGAGGACGAGGAGCAGAACATGATGGTGAATAATAACAATGACCTTGATGGTGATGCTGAAAATCAGGATGATGATGAGAGGTTCAACTTGGTGAGTGTGGAAGACAAAAGGGTTGGGGAAGAGGGAATGATGGTGAGAGAAGAGGAAGATAGTCTTCGTCTTTCTGATGACAACAACAACAATAACAACATGGACGACAACCTTGACAACAATTCGGTGCAGATTCGGTTTCTTGGTCATGAAGAGCCTCAGAAGAATTGTGCAGTGCAGGAGGGCAAGAACAAGAGGAAGAGACCAAGGACTCTTAAGACAAGTGAAGAGGTCGAGAGCCAGCGTATGACTCACATAGCAGTTGAAAGGAACAGGAGAAAGCAAATGAATGAGCATCTTCGTGTACTTAGATCCCTCATGCCTGGTTCATATGTTCAAAGGGGTGATCAAGCTTCTATAATTGGGGGGGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAATGTTTGGAGTCACAAAAGAGAAGAAGGTTACTTGGAGAAGCTCAAACAAGACAAGTTGGGGATCCCTCTCTTGGACAACAACAGCCTCCATTCTTTCCACCATTGCCTACTCCAAATGAGCAGATGAAGCATGTGGAGATGGAAACGGGGCTTCGCGAAGAAACCGCGGAAAGTAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTAGGATTTGATGCTATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTTGAAGATCTTCAACTTATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTCCTCTATTCATTCAATGTCAAGGTGGCTGGTGATTCAAGGTTCACAGCAGAAGATATAGCCAGCTCGGTTCAGCAGATATTCAATTTTATTCATGCAAACACTAGCATGTGATAACAATTATATATAGCTATTATATATGTTGTGTGGTAGTGTAGGTGCTGTATTGGTACAAGAATTACTTGTGATTCCTATAGCTGTCTTTATGAGATACCGATATTGATTTTACACCACCGCTTGCCTCCTATGTTGTTTGGATTTTTACCATTGTTGTTTTCGTAAGTGGTGACTGAACAAGATGATTTTAGAGCTGATATGCCTACTCTTTCTATCATGTATTTTCTCTCTCCTAAAAGTGGCACATTGTATTATTGTATCAAAGGGAAAC 1654 0.419 MSDLFTLSYHHHMLFFSNFVEPFSLLQAPSMPPSFNTLDYSLDQHHHNNLYQPNQHLMKFQGDEINGSMVDYMPQTPPPPPPPHGFYGATSAGTTPYEKLSFADVMQFADFGPKLALNQKNCEESGIDPVYFLKFPVLNDKMVEEDEEQNMMVNNNNDLDGDAENQDDDERFNLVSVEDKRVGEEGMMVREEEDSLRLSDDNNNNNNMDDNLDNNSVQIRFLGHEEPQKNCAVQEGKNKRKRPRTLKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQTRQVGDPSLGQQQPPFFPPLPTPNEQMKHVEMETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVAGDSRFTAEDIASSVQQIFNFIHANTSM 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste1g02976 459 PANTHER TRANSCRIPTION FACTOR FAMA 163 450 IPR044283 GO:0003700|GO:0010052
Pste1g02976 459 FunFam Basic helix-loop-helix transcription factor 245 320 - -
Pste1g02976 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 321 IPR036638 GO:0046983
Pste1g02976 459 Gene3D - 246 320 IPR036638 GO:0046983
Pste1g02976 459 CDD bHLH_AtFAMA_like 257 324 - -
Pste1g02976 459 MobiDBLite consensus disorder prediction 325 347 - -
Pste1g02976 459 MobiDBLite consensus disorder prediction 231 257 - -
Pste1g02976 459 MobiDBLite consensus disorder prediction 190 212 - -
Pste1g02976 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 305 IPR011598 GO:0046983
Pste1g02976 459 Pfam Helix-loop-helix DNA-binding domain 255 306 IPR011598 GO:0046983
Pste1g02976 459 SMART finulus 260 311 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste1g02976 Pste-Chr1 13051972 13054245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste1g02976 82 459 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 60.459 1.12e-144 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste1g02976 HLH 1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g02976 1 13051972 13054245 Pste1g02976 1 13051972 13054245 ECH