Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1938 ATGTTAGAAAACAACAACAACACTACAAATTCTTCTTCTGATACTGCTTTTCCATTATCTGAAAATGGAGGTGCTAATAGTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAAGTTGTGTCTCTTTCGCCAAAGACTTTGTTAGAATCTGATAGATATGTATGTGAGATCTGTAACCAAGGCTTTCAAAGAGACCAGAATCTTCAAATGCATAGAAGAAGACACAAGGTGCCATGGAAATTACTGAAGAGAGAAACAACACAAGGATTGAAAAAGAGGGTTTTTGTTTGTCCAGAACCAAGTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGACCTTGTTGGTATAAAAAAACACTTTAGAAGAAAACATAGTAATCACAAACAATGGGTTTGTGAAAAATGCAACAAAGGTTATGCTGTTCAATCGGATTATAAAGCTCATATCAAAACATGTGGTACTAGAGGACATTCGTGTGATTGTGGTCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATGCATGCAATGTGAGAGGGAAGAACCAACAACCAGAGTTTCAAGCAACAACTATTCAACCTGCATGTTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTCAGTGTGTCAGCTCCATTACAAGGACTACCAATTATCCTTCCAAAGCCATTTGACAAACCTTCCACCTCTCATCAACATAACTTAGAGCTTCAACTCTTGTTACCTTCTTCTACAAACCCTCGAGCCGAAAAACAAAATCCGAACCATCAAAACTACGAAACGACGCATTTGAAACTCTCCATAGGAAGTAATAACGAATCAGAGAAACAAAGGAATTCCATTTCCACCTCTACATTGGAAGTAACAAGGTTGAAGGAGTATAATACCGAGGAGCTAAAGTTGGCGATGGCGGAAAAGAGTTACGCAGAAGAAGCTAGAAAAGAAGCTAAACGACAGATTGAAATAGCTGAAGTTGAGTTTGAGAATGCTAAAAGGATAAGAAAACAAGCTCAAGATGAACTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTGTTAAGAAAATAAGCAACACTGTTATGGAAATAACATGTCAAGCTTGTAAACAACAGTTTCAATCTTCAACTTCTGGTGTTCCTTCAGAAGAAACATCCATTGTTATGGGCTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1245 0.3863 MLENNNNTTNSSSDTAFPLSENGGANSNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACNVRGKNQQPEFQATTIQPACSSRTASSTSPSSEANFSVSAPLQGLPIILPKPFDKPSTSHQHNLELQLLLPSSTNPRAEKQNPNHQNYETTHLKLSIGSNNESEKQRNSISTSTLEVTRLKEYNTEELKLAMAEKSYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAVKKISNTVMEITCQACKQQFQSSTSGVPSEETSIVMGYMSSATTEGEAE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1938 414 Gene3D Classic Zinc Finger 122 200 - -
Psa7g1938 414 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 414 - -
Psa7g1938 414 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Psa7g1938 414 SMART c2h2final6 137 164 IPR013087 -
Psa7g1938 414 SMART c2h2final6 59 81 IPR013087 -
Psa7g1938 414 SMART c2h2final6 101 131 IPR013087 -
Psa7g1938 414 MobiDBLite consensus disorder prediction 386 414 - -
Psa7g1938 414 SUPERFAMILY beta-beta-alpha zinc fingers 58 157 IPR036236 -
Psa7g1938 414 MobiDBLite consensus disorder prediction 386 405 - -
Psa7g1938 414 Gene3D Classic Zinc Finger 37 102 - -
Psa7g1938 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Psa7g1938 414 MobiDBLite consensus disorder prediction 1 46 - -
Psa7g1938 414 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Psa7g1938 414 MobiDBLite consensus disorder prediction 1 32 - -
Psa7g1938 414 PANTHER OS03G0310200 PROTEIN 1 414 IPR039288 GO:0009630
Psa7g1938 414 MobiDBLite consensus disorder prediction 200 221 - -
Psa7g1938 414 Coils Coil 313 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1938 Psa-Chr7 142470172 142472288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1938 21 414 C2H2 Transcription Factor Family AT2G01940 57.957 4.29e-158 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g1938 zf-C2H2 0.0038 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1938 7 142470172 142472288 Psa7g1938 7 142470172 142472288 ECH