Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g1909 ATGTTCATGGTGATGGTGATGATGAGAGTTTCTGATTCTTTTGATAAATATGAGTCAAAAGGTAAAGAGGTTATGGTTTCTGAGAATTCAAACCAAGATGGGAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGAAACAAGAGAGGATTCTTCCAAGAGATCTGTTGAAGAAGAAGATGTTGAGAGAGAAAGAGAGAGTGTTAGGGATAAGAAACCGAAGCTTGAGACACTGAATCTCTCTCTTGCTTTACCTGATGTGTCTCTTTCTCTCACTGCTTCAAACGCCTTACATAATAATGGTGATCAGCAACAGCAACTGGTTAGGACCAAACCTAGTAGGCCTTCAACTACAGTTACTACTTATTCAACTGATTATACAGCACCTTCTTTGTCTCACTCTTATTCACACCAGTTTTCGCACAATCCAAGTTGCTCTCTAACGCGGAATTCGACTGAGAATTTTGAGTTTTCGATGAGCAAAGATGATCATATTTGGAACTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATAGGTGATGGTGTTCTTGCTTTGTCGAATCATGGAGGTGGAACCGGTATCAGTTCGTTCATGCAGCAAGGGAATAATAGTCAGTATAAAACTACTAGTTCGGAGAATCATTCTTTTTATCCGTCTGAGTTGCCTGCTAGACCTAGATTTGAAGCTCATTCAGGGGATTCAAGAGGAAGAAACTCTGAGAATCTGAGAATGTTTGAAGGTTTAGATGGTGGTATGGTTAGGAATGTTTCGAGACCGGAAAGAATTGTTAGGGAAATTGTTTCAGAATCTATCCCTATTGTTTCACTGACGGTTCAGGAGTTTAGCGATGAAGTCGTTGCGTCGACTCAGGAATACTTGAAGAATCTGATTGAGAACAAGAAAGAAGAATTGGTCAGCCTTCAAAACCGCCTTGAGAGAAGGTCTGATCTTACCAAGGAGACTCTTTCAAAGGGCAATAAAGTTCAATTAGAGATTTTAGTTGCTGTCAAGATGGGGCTGTCGAGCTTTTTATACGGTAATCTTCAATTATCTGAGATGATAGAGATTTTCTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGATTGTGACTGTAAGATTTGCTCGGGAAACAAAGGGTTTTGTAGCTCTTGTATGTGTCCTATTTGTTTGAACTTCGATTGCGCAAGTAACACTTGTAGCTGGATTGGATGCGATGTTTGTTCGCACTGGTGCCATGCTGTCTGTGGCCTCCAAAGGAAGCTCATCAAACCAGGGCCAAGCTTGAAGGGGCCTTCTGGGACATCGGAAATGCAGTTTCATTGTATTGGATGCGGACATGCCTCGGAAATGTTTGGATTCGTCAAAGACGTGTTCATGTGTTGTGCTAAGGATTGGGGACTTGAAACTTTGTTGAAAGAGCTTGACTGTGTTAGGAGGATTTTTATGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATTTTAAAACCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCCTGCAATTACATCATGCAATTTTTCAACTATGCGGAGAACATGGCAAACTATCCGGCTTCTGGTTTTTCTTCAAAGGAATTGGTAGTCTCTCAAGCCAACCTTCCAAAGGACACACTATCTCTTCCAAAAGCTAACTCTTCAATACAGAAATACTCTTATGACTCGAGCTACTCGAGGCCACATTCCGGTACCTCGTCTAAAGATCTTCATCAAAAAGACCTCAAAGCTTCCATCTTAAGCGAGCTAAAAAACGACGCTGATCTTCAATTAGCAGCTTTACTAAGCAAAGGCGGGATCGAAAGCTTGGAGAGCATCGTGCGGATAAAGGAGGCAGAAGCTAAAATGTTCCAAACTAAAGCAGACGAAGCGAGGAGAGAAGCAGAAGGGTTTCAGAAGATGGTCAGTTTAAAGACTGCTCAGATGGAAGATGAGTATACAACAAAGCTTTCGAAACTGAGTCTGCATGAGACCGAGGAAACGCAGAGAAGGAAGTTGGATGACCTGAAAGTCGTGGAAAATTCCTACTTCGATTACTATAAAATGAAGAAGAGAATGCAAGATGAGATCGATGGTTTGTTGCAGAGAATGGAGGCAACAAAGCAGCAATGGATTTAA 2190 0.4114 MFMVMVMMRVSDSFDKYESKGKEVMVSENSNQDGKWVERDFLSLSETREDSSKRSVEEEDVERERESVRDKKPKLETLNLSLALPDVSLSLTASNALHNNGDQQQQLVRTKPSRPSTTVTTYSTDYTAPSLSHSYSHQFSHNPSCSLTRNSTENFEFSMSKDDHIWNCGEGTNGSVHSRFKPIGDGVLALSNHGGGTGISSFMQQGNNSQYKTTSSENHSFYPSELPARPRFEAHSGDSRGRNSENLRMFEGLDGGMVRNVSRPERIVREIVSESIPIVSLTVQEFSDEVVASTQEYLKNLIENKKEELVSLQNRLERRSDLTKETLSKGNKVQLEILVAVKMGLSSFLYGNLQLSEMIEIFLYRRCRNVTCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGLQRKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLLKELDCVRRIFMGSEDRKGKELHFKTDDLLLKLQTKIVSPSDACNYIMQFFNYAENMANYPASGFSSKELVVSQANLPKDTLSLPKANSSIQKYSYDSSYSRPHSGTSSKDLHQKDLKASILSELKNDADLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARREAEGFQKMVSLKTAQMEDEYTTKLSKLSLHETEETQRRKLDDLKVVENSYFDYYKMKKRMQDEIDGLLQRMEATKQQWI* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g1909 729 Pfam PHD - plant homeodomain finger protein 367 491 IPR032881 -
Psa7g1909 729 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 282 304 IPR004082 -
Psa7g1909 729 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 358 379 IPR004082 -
Psa7g1909 729 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 404 424 IPR004082 -
Psa7g1909 729 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 477 496 IPR004082 -
Psa7g1909 729 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 625 645 IPR004082 -
Psa7g1909 729 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 664 686 IPR004082 -
Psa7g1909 729 Pfam Coiled-coil region of Oberon 590 718 IPR032535 -
Psa7g1909 729 Coils Coil 707 727 - -
Psa7g1909 729 MobiDBLite consensus disorder prediction 100 121 - -
Psa7g1909 729 MobiDBLite consensus disorder prediction 42 70 - -
Psa7g1909 729 CDD PHD_OBE1_like 397 456 - -
Psa7g1909 729 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 16 728 IPR004082 -
Psa7g1909 729 PANTHER PROTEIN OBERON 3 16 728 - -
Psa7g1909 729 Coils Coil 631 651 - -
Psa7g1909 729 Coils Coil 295 322 - -
Psa7g1909 729 PIRSF UCP025218 98 729 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g1909 Psa-Chr7 140085970 140089942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g1909 367 574 PHD Gene Family AT5G57380 25.000 2.38e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1909 7 140085970 140089942 Psa7g1909 7 140085970 140089942 ECH