Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g0214 ATGGACGATGTAAAAGACAAGATGAAAGGTTTCATCAAGAAAGTCAATAACCCTTTCTCATCTTCATCCTCTGGAAAATTCAAAGGCCAAGGTAGAGTTCTTGGCTCTTCTTCATCTTCCTCATCATCATCTACACCGGTTAATTCCATTTCTACCCCTCGCCCCTCTCCTTCTCAGAATTCCAATCCTATTTCAAAACCCAAACCCGAACCCAAACCCAAACCCGAACCCACTCTACCGATTACCTCAGCTTCTGATGATAGCAAGATTGAAAAAGCTCGTAAGCATGGAGATAGATTTGATCCGTTTGATTCTTTGGTCACTTCATCTCAGAGATCTCGAAATGGATATTCAGTTAATGTATATGAATGTCCTATTTGTAAAACTCCGTTTAGGTCTGAAGACGAGGTTTCTGAACATGTGGAAAGTTGTTTGAGTAATTCAGTTAGAAATGATGATGATGGAAGATTGGTGGAGAGTGAAGTTGTTGTTGAGAGTAACACTGAATTGGAGATTTGTGTTGGGAGTTATGTTTCGGAGAATCCGTCGGAAGGATCGGTTGATATTGTTTTGAAGTTGTTGAAGAATATTGTTAAGGAGCCTGAGAATGTTAAGTTTAGGAAGATTAGGCTGAGTAATCCCAAGATTAAGGAAGCTGTTGTTGATGTTAGTGGTGGGGTTGAGTTGTTGAGCTTTTTGGGTTTTGGACTTAAGGAGGAGAATGGAGAGACATGGGGGTTGATGGAGGTTCCTAATGAGGAGAAGATAGATTTGATCAAGAAAGCAATTGTGTTGTTGGAACCACAATTGGTAAAGGATCCTCCAAAGAAAGATAGTTTAGTGTCTACAACTTCTGTTGAGAAAGTAGCCGATGTTGAACCGAAAAAGATCGACAGACAGGTCAAGGTCTTCTTTGCTGTCTCTGAAAGCGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTACAAACGATCAGTTGATGAAGTGAGAAGAGATGCTGAATCAAGGAGAAAAAAGTTTGAAGAGTCTCAGCTTTTAATCCCCAAGTCCCTTAAAGAAAAACAAGCTAAAGCTGCGAAGAGGCGATACACAAGAACTATCATTAGGGTTCAGTTTCCAGATGGAATTGTACTTCAAGGTGTATTTGCTCCGTGGGAACCAACTACTGCTTTGTATGAGTTTGTCAGCTCTGCATTAAAAGAACAAGGTTTGGAATTCGAGTTAATGCATCCTGTAGTTGTTCAACGGCGAGTTATCCCATGTTTTCCAAAAGCCGGGCAAAAAGCCAAAACAATAGAGGAAGAAGACTTGGTACCTTCTGCTCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACTAGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1419 0.4024 MDDVKDKMKGFIKKVNNPFSSSSSGKFKGQGRVLGSSSSSSSSSTPVNSISTPRPSPSQNSNPISKPKPEPKPKPEPTLPITSASDDSKIEKARKHGDRFDPFDSLVTSSQRSRNGYSVNVYECPICKTPFRSEDEVSEHVESCLSNSVRNDDDGRLVESEVVVESNTELEICVGSYVSENPSEGSVDIVLKLLKNIVKEPENVKFRKIRLSNPKIKEAVVDVSGGVELLSFLGFGLKEENGETWGLMEVPNEEKIDLIKKAIVLLEPQLVKDPPKKDSLVSTTSVEKVADVEPKKIDRQVKVFFAVSESVAAKIELPDSFYKRSVDEVRRDAESRRKKFEESQLLIPKSLKEKQAKAAKRRYTRTIIRVQFPDGIVLQGVFAPWEPTTALYEFVSSALKEQGLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTSLRNELLEISEPLVNG* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g0214 472 Gene3D - 177 267 - -
Psa7g0214 472 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 471 - -
Psa7g0214 472 Gene3D - 355 448 - -
Psa7g0214 472 MobiDBLite consensus disorder prediction 1 97 - -
Psa7g0214 472 Pfam UBX domain 363 412 IPR001012 GO:0005515
Psa7g0214 472 Pfam PUB domain 183 258 IPR018997 -
Psa7g0214 472 ProSiteProfiles UBX domain profile. 361 445 IPR001012 GO:0005515
Psa7g0214 472 SMART PGNneu 185 252 - -
Psa7g0214 472 SUPERFAMILY Ubiquitin-like 331 445 IPR029071 -
Psa7g0214 472 MobiDBLite consensus disorder prediction 60 78 - -
Psa7g0214 472 SUPERFAMILY PUG domain-like 176 266 IPR036339 -
Psa7g0214 472 CDD PUB 183 267 - -
Psa7g0214 472 MobiDBLite consensus disorder prediction 15 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g0214 Psa-Chr7 14994921 14999821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g0214 1 393 C2H2 Transcription Factor Family AT2G01650 56.784 3.47e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa7g0214 UBX 8.4e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g0214 7 14994921 14999821 Psa7g0214 7 14994921 14999821 ECH