Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1198 ATGGCCGAAGAAACAGACTCCAAACTCACCCAATTCAAAAACTCTGTCACAAATCTTGGTTCTTCAACACAGGGTTATGGGGACGCTACACTGATGAGGTTTTTGATTGCTCGCTCTATGGATTCTGATAAAGCAGCTAAGATGTTTGTTCAATGGCGTAAATGGAGAGAGACTATGGTTCCTAATGGGTTTATTTCAGATTCTGAAGTTCCCGATGAGTTGGAGACTAGAAAGATCTTTTTGCAGGGTTTGTCTCAAGATATGTTTCCTCTCATGATTGTTCAAGCATGTAGACACTTCCCATCCAAAGATCAGAATCAATTCAAGAAATTTATCGTACATTTACTGGACAAGACCATCGCGAGTGCTTTTAAAGGAAGGGAAGTAGGAAATGAAAAGTTGATTGGAGTTCTTGATCTGCAGAATATTTCTTATAAGAACGTTGATGCACGTGGTTTAATTACTGGATTTCAATTTTTACAGAGTTACTACCCTGAACGTTTAGCAAAGTGTTATATTTTACACATGCCATGGTTTTTTGTGAGTGTTTGGAGACTAGTTTCTGGCTTCCTAGACAAGGCAACACAAGAAAAGATTGTGATTATAAGCAATGAAGATGAGAGAAAGGAATTCATAAATGAAGTTGGTGAAGAGATTCTCCCAGAAGAGTATGGTGGAAGAGCAAAGCTTGTAGCCATCCAAGATTTTGAAGTGACACCATTAGAAAATGGAAGAACAAATTGA 744 0.3817 MAEETDSKLTQFKNSVTNLGSSTQGYGDATLMRFLIARSMDSDKAAKMFVQWRKWRETMVPNGFISDSEVPDELETRKIFLQGLSQDMFPLMIVQACRHFPSKDQNQFKKFIVHLLDKTIASAFKGREVGNEKLIGVLDLQNISYKNVDARGLITGFQFLQSYYPERLAKCYILHMPWFFVSVWRLVSGFLDKATQEKIVIISNEDERKEFINEVGEEILPEEYGGRAKLVAIQDFEVTPLENGRTN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1198 247 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 67 232 IPR001251 -
Psa6g1198 247 Pfam CRAL/TRIO domain 76 226 IPR001251 -
Psa6g1198 247 PANTHER SEC14 CYTOSOLIC FACTOR-LIKE 1 239 - -
Psa6g1198 247 SUPERFAMILY CRAL/TRIO N-terminal domain 3 65 IPR036273 -
Psa6g1198 247 Gene3D - 1 237 IPR036865 -
Psa6g1198 247 SUPERFAMILY CRAL/TRIO domain 67 229 IPR036865 -
Psa6g1198 247 SMART sec14_4 73 229 IPR001251 -
Psa6g1198 247 PANTHER OS03G0850700 PROTEIN 1 239 - -
Psa6g1198 247 CDD SEC14 80 226 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1198 Psa-Chr6 47763369 47768210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1198 24 240 Acyl Lipid Metabolism Gene Families AT1G55840 21.795 1.23e-12 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1198 6 47763369 47768210 Psa6g1198 6 47763369 47768210 ECH