Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1187 ATGATAATCAGTTCGAGAAGTTCGAAACGGAAGCTTCAACAGGAAGCACCGCTGCAGGTGGTTAGCAAGAAGCTCCGATCGAAGATTCCTCGCCGGAGGAGACGTCAGATCTCGCCGGTGCTGATTGCTTCACCGAGATTCAAAATATCTGGCGAGAATCCGAATTTGTCAGTTATTTCTGTGGATTCGAGCTCCGCTTCTGATTTCGCCGGCGGTGAAGTTTCGTGCAATTCGAGCAGGATTTCTGCTGTGTTGTCCAGTGAACGAAGGACGTGCTCGAGGAATGAAATTTCAAGTGAAACTGATTGCGTTCGGAAGGAAGAATGTGTGAGTTTGTTTAGAAATCCGAGATTTGAGAAGCGGAGTGAGAATCAAGTGGAAGTTTCGGAGACTTCATGTGTGGATTCTAATTCTGGAGTTCGTGAACGGAGTACGAGCTTGATTTTGAAGTTCAATAGTGGAAAAGAGAATGATGAAATTTCGGAAGTTACTTGTGCAGAGAATTCAAAATCGAGTAACGGAAATTTGAATATCTCGTCGAAGATTACGCGAAACGATGTCGTTTCTGTTAGTTCTGGTGCTCGAGAAACATCGTTTATAGATGAGAACGGCACGGATTTGAAAGCGCAATCGATTATGAAGCAATTGCCGGATAATTCAGGTTATGATTCCGATCTAGCTTGCTCTGAGCAATTGCAATTTTCGTACTACGAAGATGAATCGGAATATTGTTCAAGTCAGGGAACTACATTCTCTGATCTTCACTCCGAGATGTTTGGTGAATGCTCAGACTGTAGTCCGTCTCTGTTTATTGAATCTGGTAGCGAGTTTTCACAGGGATCCGTTGGTGAAACACCTTCGCACACTTATTCGCTGTTGCTTCAATATCGTAAGGAATTCACGACGTTGTTAGCTTATCCTGTTAATCATACTCCAAGTGTTGAAGAAGATGCTTCTCTTCAATGCAATTTTTCAAGGCTTGAAGATTTGGATGATGAAGACAGTTACCAGATGCTTAGAATGAGGGAACGGAAGCAAGTTTTTATGTGGAATTATGCTGAGAGATATTTCTCTACAACGGATTTTACCGAGCTTGTATTTCTGCAACGCTGCCGAATGGTTCACTGGATCGTTGAGCATTCTTATCGAAAACAGCTTCGACAAGAGACAATATTTCTTGCAATCAACCTACTTGACCGTTTCCTGAGCAAGGGGTACTTCAAAGCTGAAAAAAGCCTTCAAATTGTTGGAATAGCGTGTTTCACTTTGGCAATCAGAATTGAAGAAAACCAGCAATATAACAGAGTGGGGCAAAAGAATTTCTACATAGAAAAAAGTGTGTACAGTAGATGTGAAGTGGTGGCTATGGAATGGATGGTGCAGGAGGTGCTCAAGTTTCAATGTTTCCAACCAACCATCTACAATTTCTTGTGGTTCTACCTTAAAGCTGCTAATGCTGATGCTGTTATGGAGAAAAGGGTCACTTGCCTAGCTTTACTGGCTCTATCAGGTCCTGATCAGCTGTGTTACTGGCCCTCAACTATTGCTGCTGCACTTGTAATCCTTGCTTGTCTAGAACACAATGAGAAAGCATCCAACAAAGTCATAGGGATCCACATTAGATCAAAGGATGAGAATTTGCATGAATGCATGGAGAGCCTGGAGTGGCTGTTACGCTATATATGA 1686 0.4253 MIISSRSSKRKLQQEAPLQVVSKKLRSKIPRRRRRQISPVLIASPRFKISGENPNLSVISVDSSSASDFAGGEVSCNSSRISAVLSSERRTCSRNEISSETDCVRKEECVSLFRNPRFEKRSENQVEVSETSCVDSNSGVRERSTSLILKFNSGKENDEISEVTCAENSKSSNGNLNISSKITRNDVVSVSSGARETSFIDENGTDLKAQSIMKQLPDNSGYDSDLACSEQLQFSYYEDESEYCSSQGTTFSDLHSEMFGECSDCSPSLFIESGSEFSQGSVGETPSHTYSLLLQYRKEFTTLLAYPVNHTPSVEEDASLQCNFSRLEDLDDEDSYQMLRMRERKQVFMWNYAERYFSTTDFTELVFLQRCRMVHWIVEHSYRKQLRQETIFLAINLLDRFLSKGYFKAEKSLQIVGIACFTLAIRIEENQQYNRVGQKNFYIEKSVYSRCEVVAMEWMVQEVLKFQCFQPTIYNFLWFYLKAANADAVMEKRVTCLALLALSGPDQLCYWPSTIAAALVILACLEHNEKASNKVIGIHIRSKDENLHECMESLEWLLRYI* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1187 561 Pfam Cyclin, C-terminal domain 471 555 IPR004367 -
Psa6g1187 561 Gene3D - 363 462 - -
Psa6g1187 561 Gene3D - 463 560 - -
Psa6g1187 561 Pfam Cyclin, N-terminal domain 368 467 IPR006671 -
Psa6g1187 561 PANTHER CYCLINS 9 552 IPR039361 -
Psa6g1187 561 SUPERFAMILY Cyclin-like 471 558 IPR036915 -
Psa6g1187 561 PANTHER CYCLIN-SDS 9 552 - -
Psa6g1187 561 CDD CYCLIN 370 429 IPR013763 -
Psa6g1187 561 SUPERFAMILY Cyclin-like 330 467 IPR036915 -
Psa6g1187 561 ProSitePatterns Cyclins signature. 370 401 IPR006671 -
Psa6g1187 561 SMART cyclin_7 375 462 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1187 Psa-Chr6 47096416 47100915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1187 370 557 Core Cell Cycle Gene Families AT5G25380 32.653 4.25e-18 85.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1187 6 47096416 47100915 Psa6g1187 6 47096416 47100915 ECH