Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1185 ATGCCTCTCTCAATCTCCACTTTCTTCTTCTTGTTTTTCCTCTTCAATCTTCAACCTTCAACTTCACAACAACAACAACAACTCAAATCCTTCAACACCTCACTCTCACCATGGCTTCCCTCACAAAACAGAACCCTCACCTCACCAAACTCCAACTTCGCAGCTGGTTTTTTCCCCATACCAAACTCACCAAACCTCTTCACTTTCTCAATATGGTTCTCCAAAATCCCTCCATCTTTAGACTCTATCATCTGGAGCATCTCAACAAAACTCAACTCATCTTCCTCTCTCATCATAACCTCAAAAGGTGAACTCTTGCTCAACAATCTTTCCTTTCTTGCTAATTCAAATTCCACACAACTTGTTCTTCATGATAATGGAAACCTTGTTTTTGGAAATTGGACTAGCTTTTCAAATCCAACTAACACTATCTTACCAAACCAAAACATTACTGGGATTGAAATTGTTTCAAGTAACAAAAAGTTCAAGTTTGTTAAATCTCAGAATTTGATTCTCAATGATGATTCCTCATCGTCAACTCAGTACTATAGTACGCCTAGTGCTTTGTTGTTTATGGATGATGCTGGAAAAATGAGTATGCAAAGTAACTCTTTTCTTACTTCTGATTATGGTGATTCTAGGTTTAGGAAACTTGTTCTTCATGATGATGGAAATTTGAGAATTTATAGCTTTTATCCTGAACAGGAAAACTCTTGGGTTATTGTTTGGTTAGCAATTTGGGAAATGTGTAAAATCAAAGGAAAGTGTGGACCTAATTCAATTTGTATGCCTAGAGAAGATTTCTACAATTCTACTTTTTGTGTTTGTCCTTCTGGTTTTGAGCCTGTTGAAGGTGGGAGTGAAGTTGGTTGTAAGAGGAAAATTCCACTTACAGTTACAAGTAACACTCATTTTCTTAGGCTTGATTACGTAAACTATACGAGTAGCGGTTCGATGAATCAAATCTATGCTTTAAACTATACAACTTGTGAAGCAAGTTGTAAACGAAACTCCAGTTGTCTTGGATTTGGATTCAAGTACGACGGATCGGGCTATTGTGTTTTGTTACAAGGTAAAGAGCTTCAATATGGTTTATGGTCGCCCGGGACTGAGCTAGCTTTGTTTTTGAAAGTTGATCAGAAGGAATCCGAAGGATCAAATTTCATCGGTATGACGGAAGTGATGCAGACGACTTGTCCCGTGAGGATAAGTTTGCCTTTACCTCCTAAGGATTCGAACACAACGACGAGAAATATTGTGATTATATGTACGCTTTTCGCGGCTGAACTTATTGCTGGTGTGGCTTTCTTTTGGTCTTTCCTTAAGAGGTATATCAAGTATAGGGACATGGCTACCACTTTAGGACTTGAACTTTTACCTGCAGGTGGTCCGAAACGGTTTACCTACTCGGAGATCAAAGCCGCGACTAATGATTTCTCGAATCTCATTGGGAGGGGCGGGTTTGGAGATGTGTACAAAGGTGAGTTGCCTGATCATCGTGTTGTCGCGGTGAAGTGTTTAAAGAATGTTACAGGTGGTGACGCGGAGTTTTGGGCGGAAGTTACCATAATTGCAAGGATGCATCACTTGAACTTGGTTCGATTGTGGGGCTTCTGCGCCGAGAAAGGTCAAAGGATACTTGTTTATGAGTACATCCCGGGTGGATCGTTGGATAAGTATCTCTTTAGAGTGAAATCTCGCAAGGGAAGCGGGGAATCTGAGTCTGAACAAAGTCATGATAATAGTTCAAATCCAAGTACTTTAGAGAAACCTGTTTTGGATTGGAACATGAGGTATAGAATTGCTCTTGGTATGGCCAGGGCGATCGCGTATCTGCACGAGGAGTGTTTGGAATGGGTTTTGCATTGTGATATAAAGCCGGAGAACATTCTCTTAGGCGATGATTGTTGTCCTAAGATATCGGATTTTGGATTGGCGAAACTGAGGAAAAAAGAAGACATGGTGACAATGTCAAGAAGGAGAGGGACTCCTGGCTATATGGCACCGGAATGGATAACAGCGGATCCAATAACTTCAAAGGCCGATGTGTATAGTTTCGGTATGGTGCTGTTGGAGCTTGTGAGCGGAGTGAGGAACTTCGAGATTCAAGGATCTGTGGTGAGGAGTGATGAATGGTATTTTCCGGGATGGGCTTTTGATAAGATGTTTAAGGAAATGAGAGTTGAAGAAATTCTTGATAGTCAAATTTCGCATGCTTATGACAGTAAATCGCATTTTCAGTTGGTTAATAGAATGGTGAAGACTGCAATGTGGTGTTTGCAGGATAGGCCTGATGCAAGGCCAACAATGGGGAAGGTGGCTAAGATGATAGAAGGGACTGTGGAGATCATGGAACCTAAAAAACCAACTGTTTTCTTCCTTGGAGAAGAGTAG 2394 0.4089 MPLSISTFFFLFFLFNLQPSTSQQQQQLKSFNTSLSPWLPSQNRTLTSPNSNFAAGFFPIPNSPNLFTFSIWFSKIPPSLDSIIWSISTKLNSSSSLIITSKGELLLNNLSFLANSNSTQLVLHDNGNLVFGNWTSFSNPTNTILPNQNITGIEIVSSNKKFKFVKSQNLILNDDSSSSTQYYSTPSALLFMDDAGKMSMQSNSFLTSDYGDSRFRKLVLHDDGNLRIYSFYPEQENSWVIVWLAIWEMCKIKGKCGPNSICMPREDFYNSTFCVCPSGFEPVEGGSEVGCKRKIPLTVTSNTHFLRLDYVNYTSSGSMNQIYALNYTTCEASCKRNSSCLGFGFKYDGSGYCVLLQGKELQYGLWSPGTELALFLKVDQKESEGSNFIGMTEVMQTTCPVRISLPLPPKDSNTTTRNIVIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGRGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRVKSRKGSGESESEQSHDNSSNPSTLEKPVLDWNMRYRIALGMARAIAYLHEECLEWVLHCDIKPENILLGDDCCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFEIQGSVVRSDEWYFPGWAFDKMFKEMRVEEILDSQISHAYDSKSHFQLVNRMVKTAMWCLQDRPDARPTMGKVAKMIEGTVEIMEPKKPTVFFLGEE* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1185 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Psa6g1185 797 SUPERFAMILY Protein kinase-like (PK-like) 460 777 IPR011009 -
Psa6g1185 797 SMART serkin_6 477 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1185 797 PANTHER OS07G0415500 PROTEIN 7 797 - -
Psa6g1185 797 PANTHER OS10G0101000 PROTEIN 7 797 - -
Psa6g1185 797 CDD STKc_IRAK 483 779 - -
Psa6g1185 797 Pfam Protein kinase domain 481 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1185 797 ProSiteProfiles PAN/Apple domain profile. 291 379 IPR003609 -
Psa6g1185 797 Pfam S-locus glycoprotein domain 200 283 IPR000858 GO:0048544
Psa6g1185 797 PIRSF SRK 1 797 IPR024171 GO:0004674
Psa6g1185 797 Gene3D Phosphorylase Kinase; domain 1 451 551 - -
Psa6g1185 797 Gene3D Transferase(Phosphotransferase) domain 1 554 789 - -
Psa6g1185 797 ProSitePatterns Protein kinases ATP-binding region signature. 483 505 IPR017441 GO:0005524
Psa6g1185 797 ProSiteProfiles Protein kinase domain profile. 477 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1185 797 SMART blect_4 41 140 IPR001480 -
Psa6g1185 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 91 150 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1185 Psa-Chr6 47049306 47052671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1185 465 789 Receptor kinase-like Gene Family AT4G18250 39.759 3.48e-76 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Psa6g1185 Pkinase 2.2e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1185 6 47049306 47052671 Psa6g1185 6 47049306 47052671 ECH