Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1179 ATGGGTTTCGGAGTTTCCTACGTTCTTCATCTCGTTTTGCTGTTTTCTACGATCTTCGTCCCTGCTTGGTCTCAAGATGGTGACGTGATGCAAAAGCTGAAAACTTCAATCAAATCAAGCCGTAATCTTGATTGGTCCGATTCAGATTATTGCAAATGGGAGAATGTTACATGTAACGAAGCGAGGGTCACTAGAATTCAACTCCAATCGCGTAATCTCACAGGCTTTCTACCGAAAGAACTGGTGCAACTCACTGCGTTAACAGATTTTTATTGCAATGATAACAATTTATATGGAGATTTTCCTAACATGCCGAATTCTCTTCAGAATTTGTATATTGACAAAAACAAATTCACGTCCATGCCGAGTGATTTCTTCGATAACATGAGTAGTTTGTTACTGGTGAGTATGGGTAATAACAATTTTACTCAGTGGAAAATTCCTTCTAGTCTTAAGAACTGTTTAGCCTTGAAGACTTTTTCTGCTAATAATGCTAGTTTTGTTGGTGAAATCCCTGAAATCTTTGGGGAAGAAAATTTTCCAAGTTTGGTTACTTTGCAATTGTCTTACAATTCTCTTGAAGGTAATTTGCCTAATAGTTTAGCTGGTACTTCTATAGAGAATCTTTGGGTGAATGGTCAAAAGAGTACAAATAAACTCAATGGTACTCTTTCTGTTATACAAAAGATGACATCGTTGAAAGTGCTTTGGGTTAATGTTAATTCTTTTACTGGTCCTATACCTGATTTATCAAATCTTACTCAATTGGAAGATGTTTGTTTTAGGGATATTCTTTCTGTTATACAAAAGATGACATCGTTGAAAGTGCTTTGGGTTAATGTTAATTCTTTTACTGGTCCTATACCTGATTTATCAAATCTTACTCAATTGGAAGATGTTTGTTTTAGGGATAATAGATTAACGGGTGTTGTTCCGTCGACTTTGACTTCTCTTCCTAGTTTGCGAGTTGTTAACTTGACAAACAATCAACTTCAAGGGTCACCTCCTAAGTTTCAAGATAGTGTTAAGGTTGATAATGATTTGAGTGGGACTAATAGTTTTTGTACTGCGGTTGCTGGTCAACCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTGAACCTCTTGGATATCCTTATATACTCGCCGAGAGTTGGAAAGGGAATGGCCCTTGTGGTGATAATACTTGGAAAGGGGTTATTTGTTCCGGTAGTAATATTTCAACTATCGACTTTCGTAAGCTGGGGTTTTCTGGTAGTATATCTTCTAGTTTTGCAAGCCTTAGTTCTGTGACGAAGTTGCTTCTTTCTAATAATAATCTCACTGGTACTATACCTGAGGAGCTTACTAATATGCCGGCTTTGAAAGAGATAGACGTTTCGAATAATTTGTTGTATGGTCAGATACCGAAGTTCCGTGAAGATGTGGTTGTTAATGCTGCTGGGAATCCTGATATTGGACATGATAAACCTTCTAGCCCGCCCACTCCTAGTCCTGGAGGCAAAGATAAGAAGAAATTTAGTGTTGGAGCTATTGTTGGTGTTGTGATTGGGGTTGTTTGCTTACTTGGTTTAGGGGTTTTGGTATTTGTTATGTGCCGTAGAAGATATAATAAGCGTTATGGGAAAGTTCAAACTCCAAATGCAATAGTGGTACATCCTCGTCATTCTGGAGATGGGAATGCTGTGAAGATAAGTGTTGCAGCAGCTGGAGGATCTCTTGCTGGCGGTGTAGGAGGAACTAGTGGATTTAGTCAATCAAGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTGATTTCAATTCAAGTTTTGAGAGAAGTTACTAACAATTTCAGCGAAAAAAACATATTGGGGAAAGGTGGTTTCGGCACTGTATACAAAGGAGAATTGGATGATGGAACAAAGATTGCAGTTAAAAGGATGCAATCTGATATGGTTGGTGACAAAGGGCTGAATGAGTTCAAGTCTGAAATTGCGGTTCTTACTAAGGTTCGACACAGGCATTTGGTTGCACTTCTTGGCTATTGCTTGGAGGACAATGAGAAACTTCTTGTATATGAATACATGCCTCAGGGCACTCTTAGTCAACATCTGTTCGACTGGAAAGACGATGGGTTGAAACCACTAGAATGGAAGAGAAGGCTTTCTATTGCCTTAGACGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACAGCAAATTTTCATTCACAGGGATTTGAAACCGTCAAATATCCTTCTTGGGGATGATATGCGCGCTAAAGTATCTGATTTTGGACTGGTTCGGCTTGCCCCTGAAGGACAAGCTTCATTCGAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTCACCGGACGAGTCACCACAAAGGTTGACGTATACAGCTACGGCGTGATTCTTATGGAGATAATTACCGGAAGGAGAGCAATCGACAACAGCCAACCAGACGAGAACATCCACCTTGTGACATGGTTTCGCAGGATGCAACTGAACAAAGACTCGTTCGAGAAGATCATTGATCCAGCAATGGATATCGATGAGGAAGGCTTAGAGAGTTTCAGGACTATTGCAGGGTTGGCCAGCCACTGTTGTGCAAGGGAGCCTCATCAGCGTCCTGACATGGGTCACATGGTGAATGTGCTAGCACCTCTTGTTGAGATTTGGAAGCCGTCCGAACCTGATGCCGAGGACATGTACGGGATTGACTTGGATATGAGTTTGCCTCAAGCTCTAAGTAAGTGGCAGAATATGGAAGGGCGGAGCACTACACTCGATGTTTCGTATTCTTCGTCGATGATTCCTAGTTGTGAGAATACACAGTCGAGTATACCACCTCGGTCTCCTGGATTCGCCGATTCTTTTACATCTGCTGATGCGCGATGA 2907 0.4087 MGFGVSYVLHLVLLFSTIFVPAWSQDGDVMQKLKTSIKSSRNLDWSDSDYCKWENVTCNEARVTRIQLQSRNLTGFLPKELVQLTALTDFYCNDNNLYGDFPNMPNSLQNLYIDKNKFTSMPSDFFDNMSSLLLVSMGNNNFTQWKIPSSLKNCLALKTFSANNASFVGEIPEIFGEENFPSLVTLQLSYNSLEGNLPNSLAGTSIENLWVNGQKSTNKLNGTLSVIQKMTSLKVLWVNVNSFTGPIPDLSNLTQLEDVCFRDILSVIQKMTSLKVLWVNVNSFTGPIPDLSNLTQLEDVCFRDNRLTGVVPSTLTSLPSLRVVNLTNNQLQGSPPKFQDSVKVDNDLSGTNSFCTAVAGQPCSPLVNALLSVVEPLGYPYILAESWKGNGPCGDNTWKGVICSGSNISTIDFRKLGFSGSISSSFASLSSVTKLLLSNNNLTGTIPEELTNMPALKEIDVSNNLLYGQIPKFREDVVVNAAGNPDIGHDKPSSPPTPSPGGKDKKKFSVGAIVGVVIGVVCLLGLGVLVFVMCRRRYNKRYGKVQTPNAIVVHPRHSGDGNAVKISVAAAGGSLAGGVGGTSGFSQSSSVQNVEAGNMVISIQVLREVTNNFSEKNILGKGGFGTVYKGELDDGTKIAVKRMQSDMVGDKGLNEFKSEIAVLTKVRHRHLVALLGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGLKPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEIITGRRAIDNSQPDENIHLVTWFRRMQLNKDSFEKIIDPAMDIDEEGLESFRTIAGLASHCCAREPHQRPDMGHMVNVLAPLVEIWKPSEPDAEDMYGIDLDMSLPQALSKWQNMEGRSTTLDVSYSSSMIPSCENTQSSIPPRSPGFADSFTSADAR* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1179 968 SUPERFAMILY L domain-like 369 472 - -
Psa6g1179 968 CDD STKc_IRAK 619 892 - -
Psa6g1179 968 SMART serkin_6 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1179 968 Gene3D Ribonuclease Inhibitor 366 491 IPR032675 -
Psa6g1179 968 MobiDBLite consensus disorder prediction 942 968 - -
Psa6g1179 968 PANTHER OSJNBA0070M12.3 PROTEIN 265 968 - -
Psa6g1179 968 PANTHER OSJNBA0070M12.3 PROTEIN 1 263 - -
Psa6g1179 968 SMART LRR_typ_2 429 453 IPR003591 -
Psa6g1179 968 SMART LRR_typ_2 294 317 IPR003591 -
Psa6g1179 968 SMART LRR_typ_2 104 128 IPR003591 -
Psa6g1179 968 SMART LRR_typ_2 180 203 IPR003591 -
Psa6g1179 968 SMART LRR_typ_2 318 340 IPR003591 -
Psa6g1179 968 SUPERFAMILY Protein kinase-like (PK-like) 601 914 IPR011009 -
Psa6g1179 968 Pfam Leucine Rich repeats (2 copies) 431 472 IPR025875 -
Psa6g1179 968 ProSiteProfiles Protein kinase domain profile. 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1179 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Psa6g1179 968 Pfam Protein kinase domain 614 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1179 968 Gene3D Phosphorylase Kinase; domain 1 580 690 - -
Psa6g1179 968 MobiDBLite consensus disorder prediction 484 504 - -
Psa6g1179 968 MobiDBLite consensus disorder prediction 942 957 - -
Psa6g1179 968 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Psa6g1179 968 Gene3D Ribonuclease Inhibitor 23 261 IPR032675 -
Psa6g1179 968 Gene3D Ribonuclease Inhibitor 262 361 IPR032675 -
Psa6g1179 968 Gene3D Transferase(Phosphotransferase) domain 1 691 905 - -
Psa6g1179 968 SUPERFAMILY L domain-like 38 357 - -
Psa6g1179 968 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 265 968 - -
Psa6g1179 968 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 1 263 - -
Psa6g1179 968 Pfam Leucine rich repeat N-terminal domain 25 59 IPR013210 -
Psa6g1179 968 Pfam Leucine rich repeat N-terminal domain 384 404 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1179 Psa-Chr6 46687433 46691929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1179 63 895 Receptor kinase-like Gene Family AT5G07280 31.955 2.01e-84 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Psa6g1179 Pkinase 3.7e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1179 6 46687433 46691929 Psa6g1179 6 46687433 46691929 ECH