Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1079 CATTTGGATCATGTTGGAGCGTTGGCTTACTTCACTGAAGTTTGCGGTTATAGCGGACCGGTTTACATGACGTACCCAACAAAAGCTCTGGCTCCCTTGATGTTGGAAGACTACCGGAAAGTGATGGTCAATCGTCGGGGTGAGGAAGAACAATTCACTTCTGATCATATTGCTGAGTGCATGAAGAAAGTTATTGCTGTAGATCTGAAGCAGACTGTGCAAGTAGATGAAGATCTGGAGATACGTGCATATTATGCAGGACATGTTATCGGAGCTGCGATGTTCTATGTAAAAGTCGGAGATGCAGAAATGGTTTATACAGGAGACTACAATATGACACCAGATAGACACCTAGGAGCAGCTCAAATTGATCGACTACGACTCGACCTTCTTATAACTGAATCCACATATGCGACCACGATACGTGATTCAAAATATGCTCGAGAGAGGGAATTCCTCAAAGCTATTCATAAATGTGTTTCTGGTGGAGGAAAGGTTCTTATTCCAACATTTGCTCTTGGAAGAGCTCAGGAACTATGCATTTTGTTGGAGGACTATTGGGAGCGCATGAATTTGAAGGTTCCTATCTACTTCTCTGCAGGATTAACTATTCAAGCTAATATGTATTACAAGATGCTTATTGGTTGGACAAGCCAGAAGATTAAAGATACATACTCCACACATAATGCATTTGATTTTAAGAATGTTCACAAGTTTGAGCGGTCTATGCTTGATGCTCCTGGTCCTTGTGTTCTCTTTGCCACCCCTGGGATGATAAGTGGTGGATTTTCACTTGAAGTTTTTAAACACTGGGCACCGTCTGAAAATAATCTTGTCACTCTGCCTGGGTATTGTTTGGCAGGAACTGTAGGACATAAATTAATATCAGGGAAGTCTACCAACATTGATATAGATCCTGATACACAGATAGACGTGCGTTGCCAGATTCATCAGTTGGCTTTTAGTCCTCACACAGATTCTAAAGGGATAATGGATCTTGTAAAATTTCTCTCCCCAAAGCATGTTATACTAGTGCATGGTGAGAAGCCTAAAATGGATTCTCTAAAAGAAAGAATTCATTCTGAATTGGAGATTCCGTGTTATAATCCCGCAAACAATGAAACCGTAAACATTCCTTCAACTAACTACGTAAATGCAGAAGCCTCTGGCACTTTCATCCGAAACTGCTTGAATCCAAACTTCAAGTTTCAGAAATGCAATTCAGTGGACACACGTGACTCCACTCTGATAGACAGAAACCTGACGCCCGAACTTCAAGTTGAAGATGAAAGAGTAGCAGATGGAGTTTTGGTCATGGAAAGTAACAAAAAGGCAAAGATTGTACACCGAGATGAGGTTTTGCTCATGTTGGACGAAAAGAAGCAAGAGGCTTAG 1395 0.4129 HLDHVGALAYFTEVCGYSGPVYMTYPTKALAPLMLEDYRKVMVNRRGEEEQFTSDHIAECMKKVIAVDLKQTVQVDEDLEIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAIHKCVSGGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSAGLTIQANMYYKMLIGWTSQKIKDTYSTHNAFDFKNVHKFERSMLDAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLVTLPGYCLAGTVGHKLISGKSTNIDIDPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMDSLKERIHSELEIPCYNPANNETVNIPSTNYVNAEASGTFIRNCLNPNFKFQKCNSVDTRDSTLIDRNLTPELQVEDERVADGVLVMESNKKAKIVHRDEVLLMLDEKKQEA* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1079 464 Gene3D - 144 322 - -
Psa6g1079 464 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 1 462 - -
Psa6g1079 464 PANTHER INTEGRATOR COMPLEX SUBUNIT 11 1 462 - -
Psa6g1079 464 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 310 370 IPR011108 -
Psa6g1079 464 Gene3D - 1 359 IPR036866 -
Psa6g1079 464 SUPERFAMILY Metallo-hydrolase/oxidoreductase 1 378 IPR036866 -
Psa6g1079 464 Pfam Metallo-beta-lactamase superfamily domain 3 123 IPR001279 -
Psa6g1079 464 SMART Beta_Casp_2 176 294 IPR022712 -
Psa6g1079 464 Pfam Beta-Casp domain 176 294 IPR022712 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1079 Psa-Chr6 41574527 41587337 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1079 6 41574527 41587337 Psa6g1079 6 41574527 41587337 ECH