Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1055 ATGATGATCCGAAACATTTCGAAACGTTGTCATCAGTTTCACTACACCCCAACAACAATTTTCAACGGCAAAACTGTCCTCACTTCACTCATCCACACACATTCCAATCCAAACCAAAACGAATTGTATGAATGCAAATGGAAGAATCATCAACCACAACAACAACAACAACAAGATGAAGAGAAACCCGCGTTTCAGATTTCTCATCCTTGGCCTGAATGGGTAGACTTGATGGAATGTTTGCTCAAAAAGGGTCATTTCCATGCAGAGGGTAACCCATTTTTGAATCCTTGTTTGGGTTCAAAAGAATCCAATCTTATTAGAACCGCTTGCCTTAACTTTGGTAGAGACCATTCTCATCTTTTAAGGTTTTTGTCTCGAAAAGATATAGGAGTTATTGTAACATTTGGATGTCCAAGCTTGGATAGGAAAGTGATCAACTCAGGAAAGCGTCTGAGAGCATATGCGGGCATTGATGAGGGAAATGTGTGCAGCTCGTGCAATTTGAGGGGGAACTGTGAAAGGGCATTTGTGAATGCGCGTGAAGATGAAGGTGGAAGAACAGTGGATGTTATGCGTATTATTTTGACTTATGGGCTTGACCCGATTATTGGTTCAGTGGATAACAAACCATCTCTTAATAAAATGGTAAAAGAATCTGTGAGAAGACTGCTGAAGAAGATAGTAGAGTGCAGTACTGAAGACAGAAACCCCAATTTTTCAGATACAGCAGAGGTTGCTATCAAAGAAGTTCATCCCAACCCACAAGATAAAGGCAAAAAAAATGGTCCTATGAAGCAAGGCGATTGGCTTTGCCCCAAATGCAATTTTCACAACTTCGCGAGAAATATCAAGTGCTTGCACTGTGACAACTTCTGTGAGGAAAAACTCAAGCAATTGAAGGAGGATAATAATCATTTACCTTTGAAGAAGGGAGATTGGATATGCAACAAATGCAACTTCCTCAATTTTGCAAGGAATACAAGATGTTTGCAATGCAAAGAGGGGCCTTCAAATCGCCGCGTTAATCCAGGGGAGTGGGAATGCGAATCGTGTAACTATATAAATTTCAGAAGAAACATGGTTTGCCTGAAATGTGATCATAGAAGACCTAAGGTGTCAAATACTTCAAACTCTTCCCTTCAACCTCAAGGAGAAGATAGCAGATTGACTTTTGCAGGATATCGGTTTGATAGTAACAAAGAATCACCAATGGCGTTGGAAAGAAAGAGCAGTAATAGAGATTCACAAAAGTGGAGATTTGTTGAAGATGGAAATGAACATCATATGTATTTAGAGAACTCAAATGATACTTCAGAAATGTTAGCTTTTCCTATTGCTGGAGGTAAGACTGTCATGTCTAAGATAGAAAAGGGAGAAGATTATAAGAACGAGTCGCCAAATCAGTGCAAAAAGCATTTATGGCAAAGTGAAACTGATGACGAGTTTTGTTCTTCTGATAACCAGAGTTCTGATGATGACGAGATGGCTGAATGGTTTGGAAAGGGTAAGAATGCAAAGTAG 1524 0.3963 MMIRNISKRCHQFHYTPTTIFNGKTVLTSLIHTHSNPNQNELYECKWKNHQPQQQQQQDEEKPAFQISHPWPEWVDLMECLLKKGHFHAEGNPFLNPCLGSKESNLIRTACLNFGRDHSHLLRFLSRKDIGVIVTFGCPSLDRKVINSGKRLRAYAGIDEGNVCSSCNLRGNCERAFVNAREDEGGRTVDVMRIILTYGLDPIIGSVDNKPSLNKMVKESVRRLLKKIVECSTEDRNPNFSDTAEVAIKEVHPNPQDKGKKNGPMKQGDWLCPKCNFHNFARNIKCLHCDNFCEEKLKQLKEDNNHLPLKKGDWICNKCNFLNFARNTRCLQCKEGPSNRRVNPGEWECESCNYINFRRNMVCLKCDHRRPKVSNTSNSSLQPQGEDSRLTFAGYRFDSNKESPMALERKSSNRDSQKWRFVEDGNEHHMYLENSNDTSEMLAFPIAGGKTVMSKIEKGEDYKNESPNQCKKHLWQSETDDEFCSSDNQSSDDDEMAEWFGKGKNAK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1055 507 PANTHER ZINC FINGER PROTEIN 262 289 - -
Psa6g1055 507 PANTHER ZINC FINGER PROTEIN 287 505 - -
Psa6g1055 507 PANTHER ZINC FINGER PROTEIN 46 249 - -
Psa6g1055 507 MobiDBLite consensus disorder prediction 460 507 - -
Psa6g1055 507 ProSitePatterns Zinc finger RanBP2-type signature. 347 366 IPR001876 -
Psa6g1055 507 SMART zf_4 268 292 IPR001876 -
Psa6g1055 507 SMART zf_4 312 336 IPR001876 -
Psa6g1055 507 SMART zf_4 345 369 IPR001876 -
Psa6g1055 507 ProSitePatterns Zinc finger RanBP2-type signature. 270 289 IPR001876 -
Psa6g1055 507 MobiDBLite consensus disorder prediction 460 480 - -
Psa6g1055 507 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 287 505 - -
Psa6g1055 507 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 262 289 - -
Psa6g1055 507 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 46 249 - -
Psa6g1055 507 ProSiteProfiles Zinc finger RanBP2 type profile. 310 339 IPR001876 -
Psa6g1055 507 ProSiteProfiles Zinc finger RanBP2 type profile. 266 295 IPR001876 -
Psa6g1055 507 SUPERFAMILY Ran binding protein zinc finger-like 258 291 IPR036443 -
Psa6g1055 507 SUPERFAMILY Ran binding protein zinc finger-like 336 372 IPR036443 -
Psa6g1055 507 Pfam Zn-finger in Ran binding protein and others 266 291 IPR001876 -
Psa6g1055 507 Pfam Zn-finger in Ran binding protein and others 345 367 IPR001876 -
Psa6g1055 507 Pfam Zn-finger in Ran binding protein and others 310 334 IPR001876 -
Psa6g1055 507 ProSitePatterns Zinc finger RanBP2-type signature. 314 333 IPR001876 -
Psa6g1055 507 Gene3D - 257 295 - -
Psa6g1055 507 Gene3D - 338 373 - -
Psa6g1055 507 Gene3D - 301 337 - -
Psa6g1055 507 SUPERFAMILY Ran binding protein zinc finger-like 303 335 IPR036443 -
Psa6g1055 507 ProSiteProfiles Zinc finger RanBP2 type profile. 343 372 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1055 Psa-Chr6 40475733 40480163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1055 60 447 EF-hand Containing Proteins AT1G55040 36.098 1.06e-63 220
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1055 6 40475733 40480163 Psa6g1055 6 40475733 40480163 ECH