Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1047 ATGGAAAGAGATTTCTTGAGTTTATGCTCAAACCAAGAGATTAACAATGAAGCTTCTAAAAACTCAGGATTTACAAAAGTTTCAGCAGTAAAATGGCCCTATTTCAACAAAGTCTCTGTTCATCCATATTTGATGCCTTTTAATGGTTCTGAAGAAGATAAGGCGAAAATGACATCTTCTGGTTTTGTAGAGAAATCTTTCAAACATGACGGACAAGGTGGCATTCATTTTTCTGTGAATCCGTATCCTGTGCAACATGATGTGAATCGTGCTCATGACGTGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCAGTTCCCGCAGGACATCCATTCGTTAAGAATCATTTTGCAACTGTTGGTCAGAATATGAACGGTGCTAATGTGAAGCAACCACTACTTGTGGGATCACCATTAACTACACCTCATTCGGTTCTTCCAAGGGTTGGCGCTGTTGCTGGTTTGGTTGAACAATGTGTAAAACCATCTGCACCTGCTCCTCAACTTACCATGTTCTATGCCGGTACTGTGAACATCTTCAAAGATATCACTCCCGAGCAGGTACAAGCGATCATGCTGTTGGCTGGAAATGGCTTATCAGCAGCGTCAAACACGGCTCAACCTGAAGTTCAGGCACCTAGCTCAAAGTTCGTATCAGATGATGACGGCGTGCCTATGAGTCCACCTGTAAATATACCGCCCTTCTCTGCTATTTCAAGTCCTTTATCTGTTTCTTCCCATACTGGTCCACAGTCAGGGAGTGGCTCAGTTTGCAGTGATGAATTTCTGACTGCTAAAACATCTAGAGGCCCTACTCCTACCACTTCTGCTAGCAAAGTGGAGACTCCAAAAGTAGTCAATGCAACCACCATGTTTCCATCAGCTATACCACAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAAAAGCGCAAGGAAAGGGTGACGAGTGCAACACCATATAACCTCAACAAGAAATCTGAGGATGCACCTTCGCTGAATTCGTTGGCTGCTAACATCTCCACAACTACTGGTACTAGCGCACCGTTATCAAAGCAAGGATAA 1065 0.4338 MERDFLSLCSNQEINNEASKNSGFTKVSAVKWPYFNKVSVHPYLMPFNGSEEDKAKMTSSGFVEKSFKHDGQGGIHFSVNPYPVQHDVNRAHDVKMFSVSNQAISVPAGHPFVKNHFATVGQNMNGANVKQPLLVGSPLTTPHSVLPRVGAVAGLVEQCVKPSAPAPQLTMFYAGTVNIFKDITPEQVQAIMLLAGNGLSAASNTAQPEVQAPSSKFVSDDDGVPMSPPVNIPPFSAISSPLSVSSHTGPQSGSGSVCSDEFLTAKTSRGPTPTTSASKVETPKVVNATTMFPSAIPQARKASLARFLEKRKERVTSATPYNLNKKSEDAPSLNSLAANISTTTGTSAPLSKQG* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1047 354 Pfam tify domain 165 196 IPR010399 -
Psa6g1047 354 SMART tify_2 162 197 IPR010399 -
Psa6g1047 354 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 346 IPR040390 -
Psa6g1047 354 PANTHER PROTEIN TIFY 7 10 346 - -
Psa6g1047 354 MobiDBLite consensus disorder prediction 317 354 - -
Psa6g1047 354 MobiDBLite consensus disorder prediction 313 354 - -
Psa6g1047 354 ProSiteProfiles Tify domain profile. 162 197 IPR010399 -
Psa6g1047 354 Pfam Jas motif 297 321 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1047 Psa-Chr6 40276811 40280312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1047 30 327 Tify Gene Family AT3G17860 34.375 6.58e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Psa6g1047 tify 3.2e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1047 6 40276811 40280312 Psa6g1047 6 40276811 40280312 ECH