Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g5297 ATGGCGATGCGTGATCTTATCACGGGTGCTACTTCTTGCCCTGATCCCTCCGCTTCTTCTTCCTCGCAAAACCCTCTCGGTTCTCTCGCTAACGCTCTCATCGGTTCTTCATCCAAAACGCAGGAGAGGTTGAGGGAAATTCCTACTTCGAATTCTACTGGTTTGGCATCGCAATTTTACTCGGAGCCTCTTTCTCAGCTTCCTGGTTCGGAATTCGATAAACCTTTTCTCGAGGCTAATTCTCAGGGTTCAGAGTTTTTGAATAGATTTAGGTCTGCGGGTGCGGGTGGGTTTGAGGAAACTTGGGACGAGATTCAACGTGATGGAAGTCAACTTCGGCTCTATGATGGTAGGGGACAGCTTCCACCACAGCTTCATCAACCTGCACTGGATGGGACACCACAAAGAGTTCTATCTACCTTTTTGCACTCATTTCTCGACAGCAGTCGCGGTGGAATACCTTTTCATCCCGCCTCTCTTCCAGTATTAGGTCTATCTGAAGGTGATAAACAATGTATACGCGACCGTAGCAGCATAATGGCCAGACATCTCTTTGCAGATAAAAGCGAAGAATTTATCCATGCCCAAGTAAATGCTCTTCTGTCCTCTCTAGATATTGACAGCAACGTCCGTGGCAAGGGACCCATGCCTGAAAGATTTAGGGAGCTTGATGATTATTGGAACGAGTCTCAAGGCAACATGATACAAGGTGCTCATGCTTCAGATGGATGGATTTCTGAGTTCAGTCAAAATAGGGAAAGATATGATAATCCTGATGCCTGGGCTAACTCATTTGAGCAACAACATGGTGTTAATGGCTGGGTCTCTGAATTTGAACACTCTCAATTGTCATCAGTTGATCAAATGCGAGGTATGAACATGTCAAATATTGCTGCAAGGGAGCAGACTCGTATGCTTGCAAATACACTGGCCCAGAATGCTGACCCTAAATTTCAGAACTCAAAGTTCCTTCAATTTGTATCAAAGATGAGCCGCGGAGAGTTGATTATCGATGACAATCAAGTTAAAGAGACTGCATTACCTGCACCTGGAGATTGGGCATCAGAATATCAGCAGCAGTATAATCATGGTGATGCATGGGCTGGTGAATTCTTAAATAATAAGGCTTTTTCTGGAGTTAGACCCGAACAATGGGCGAATGAGTTTGCAACTGAAAAACAGCAAAATGGAGCAGTTGATGACCAGTGGGTTGATGAATTCTCAAATTTGCGTGTTAATGACTGGGCAGAGGAATTTGGTGAGCAGGTTGGTGAAGGAGCCTTTGGGGAAGACTCTTCGAATAATTGGGCTCAGGCATATGACGAGTTCCTGAATGAGCAATATGCTGCCAAACAGCGGTCAGACAGTTCAAGGGGCGTGTATGTCTTTTCAGATTTAAATCCTTATGTTGGCCATCCAAATCCACTAAAAGAAGGCCAAGATCTCTTCAGAAAAGGGCTTTTAAGTGAAGCAGTTCTTGCACTAGAAGCTGAAGTCTTGAAAAGCCCTGAAAATGCCGAAGGATGGAGACTACTCGGAATAGCTCATGCAGAAAATGATGATGATCAACAGGCAATTGCAGCGATGATGCGTGCACAGGAGGCTGATCCAACAAACTTGGAGGTGCTTCTTGCTCTTGGTGTCAGTCATACAAATGAATTGGAGCAAAGTGCCGCTTTGAAGTATCTATTTGGATGGCTACGGCACCACCCAAAATATGGAACAATTGCCCCACCTGAGATGTCTGATTCTTTGTACTATACTGATGTTGCTAGATTATACAACGAAGCAGCTGTAATGTCACCTGATGATGCTGATGTCCACATAGTTCTTGGGGTCCTGTACAACTTATCCAGAGAATATGACAAAGCCATTGCAGCTTTTGAACGGGCATTGAAACTTAAGCCACAAGACTACTCTCTCTGGAACAAGCTTGGTGCAACACAAGCAAACAGTGTTCAAAGTGCTGATGCAATAATGGCTTATCAACAGGCGCTAGATTTAAAGCCTAATTATGTTCGTGCTTGGGCAAATATGGGTATCAGTTATGCAAACCAGGGCATGTATGACGAGTCTGTTCGATATTATGTTCGAGCACTTGCCATGAATCCAAAAGCAGAGAATGCATGGCAATATTTGAGAATTTCATTGAGTTGTGCTTCCAGGAATGACATGTTGGAAGCTTGTGATAGTCGTAATTTGGACCTTCTCCAAAAGGAATTCCCTTTGCAGTAA 2235 0.4421 MAMRDLITGATSCPDPSASSSSQNPLGSLANALIGSSSKTQERLREIPTSNSTGLASQFYSEPLSQLPGSEFDKPFLEANSQGSEFLNRFRSAGAGGFEETWDEIQRDGSQLRLYDGRGQLPPQLHQPALDGTPQRVLSTFLHSFLDSSRGGIPFHPASLPVLGLSEGDKQCIRDRSSIMARHLFADKSEEFIHAQVNALLSSLDIDSNVRGKGPMPERFRELDDYWNESQGNMIQGAHASDGWISEFSQNRERYDNPDAWANSFEQQHGVNGWVSEFEHSQLSSVDQMRGMNMSNIAAREQTRMLANTLAQNADPKFQNSKFLQFVSKMSRGELIIDDNQVKETALPAPGDWASEYQQQYNHGDAWAGEFLNNKAFSGVRPEQWANEFATEKQQNGAVDDQWVDEFSNLRVNDWAEEFGEQVGEGAFGEDSSNNWAQAYDEFLNEQYAAKQRSDSSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKSPENAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQSAALKYLFGWLRHHPKYGTIAPPEMSDSLYYTDVARLYNEAAVMSPDDADVHIVLGVLYNLSREYDKAIAAFERALKLKPQDYSLWNKLGATQANSVQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESVRYYVRALAMNPKAENAWQYLRISLSCASRNDMLEACDSRNLDLLQKEFPLQ* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g5297 744 Pfam Tetratricopeptide repeat 674 705 IPR001440 GO:0005515
Psa5g5297 744 Pfam Tetratricopeptide repeat 605 638 IPR001440 GO:0005515
Psa5g5297 744 ProSiteProfiles TPR repeat profile. 639 672 IPR019734 GO:0005515
Psa5g5297 744 PANTHER BNAC09G53570D PROTEIN 1 743 - -
Psa5g5297 744 MobiDBLite consensus disorder prediction 1 57 - -
Psa5g5297 744 ProSiteProfiles TPR repeat profile. 673 706 IPR019734 GO:0005515
Psa5g5297 744 ProSiteProfiles TPR repeat region circular profile. 673 705 - -
Psa5g5297 744 SMART tpr_5 605 638 IPR019734 GO:0005515
Psa5g5297 744 SMART tpr_5 506 539 IPR019734 GO:0005515
Psa5g5297 744 SMART tpr_5 673 706 IPR019734 GO:0005515
Psa5g5297 744 SMART tpr_5 639 672 IPR019734 GO:0005515
Psa5g5297 744 ProSiteProfiles TPR repeat region circular profile. 605 638 - -
Psa5g5297 744 Pfam Tetratricopeptide repeat 476 538 - -
Psa5g5297 744 MobiDBLite consensus disorder prediction 12 57 - -
Psa5g5297 744 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 743 IPR024111 -
Psa5g5297 744 Gene3D Tetratricopeptide repeat domain 455 744 IPR011990 GO:0005515
Psa5g5297 744 ProSiteProfiles TPR repeat profile. 605 638 IPR019734 GO:0005515
Psa5g5297 744 SUPERFAMILY TPR-like 457 743 IPR011990 GO:0005515
Psa5g5297 744 ProSiteProfiles TPR repeat profile. 506 539 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g5297 618 736 Glycosyltransferase AT3G04240 31.092 1.07e-09 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g5297 5 463193884 463206513 Psa5g5297 5 463193884 463206513 ECH