Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3249 ATGGAAGCTAGGAGTATTGAAAGGAAGAGAGCAATGATGATGGAAAAGGTGAGAAGGAACAACACAGTGGAAGAAGAAGCAGAAAATGAAGTAGAAGAGGACGATGGTGATGTTAGTCTGACTGAAGAAGAGAAGAAGAAAGGGGTTGGTGGTGGGAGAAGAGGAGGTGGTGGAGGTGTTTCTCCACCTTCCTGCCAGGCAGAGAGGTGTGGAGCTGATTTGACAGATGCAAAGAGATACCACCGCCGCCATAAGGTGTGTGAATTTCATTCCAAGGCACCTGTTGTGATGGTTGCAGGGATGAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGACTTGGTAGAGTTTGATGAGTCAAAAAGAAGCTGCCGCAGGCGATTGGCTGGACATAATGAGCGGCGCCGGAAAACCAACCCAGAAGCTGCGAGTGAGGGCAGCAGCCACGGCAAAGGACAACATCAACCTAAGGAAACACAGTGTAGGATTCAGATGAACTTACCAGGAAGTTCTGGCTACAAATCATTCAATATCAGGTGA 543 0.4825 MEARSIERKRAMMMEKVRRNNTVEEEAENEVEEDDGDVSLTEEEKKKGVGGGRRGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVMVAGMRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNPEAASEGSSHGKGQHQPKETQCRIQMNLPGSSGYKSFNIR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3249 180 SUPERFAMILY SBT domain 63 143 IPR036893 GO:0003677|GO:0005634
Psa4g3249 180 MobiDBLite consensus disorder prediction 129 180 - -
Psa4g3249 180 MobiDBLite consensus disorder prediction 158 180 - -
Psa4g3249 180 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 157 - -
Psa4g3249 180 Coils Coil 13 44 - -
Psa4g3249 180 MobiDBLite consensus disorder prediction 1 25 - -
Psa4g3249 180 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 157 IPR044817 GO:0003677
Psa4g3249 180 Gene3D - 56 126 IPR036893 GO:0003677|GO:0005634
Psa4g3249 180 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Psa4g3249 180 Pfam SBP domain 65 138 IPR004333 GO:0003677
Psa4g3249 180 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3249 Psa-Chr4 274895179 274898483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3249 1 180 SBP-box Gene Family AT3G15270 47.283 1.20e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa4g3249 SBP 2e-31 No_clan