Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3113 ATGAACAAAAAAAGTGGTGATCAACTGAATTTTTCAGCTGAAACAGGTAACATAGAACTCCTCTATGCAGCAATTCAAGATGATCCATCTATTTTGGAAAATATAGATACAATCCAATTTGTAGAAACTCCTTTACATATCTCTGCATCTAGGGGTCATCTCGAGTTTGCCACTGAAATAATGAACTTGAAACCTTCGTTTGGTATGAAGCTAAATCAGCAAGGTTTCAGCCCCATTCATCTTGCTATGCAAAACGGCCAAAAGGCAATGGTGTCTAAGTTGGTTGGCATCAATAAAGATCTTGTTAGAGTTAAAGGAAGAGAAGGCTTGACTCCACTTCATTTCGCATGTCAAAATGGGGAGGTTGAACTTTCAGCTGAATTCCTCACTGCTTGTCCGGATTCCATTGAAGATGTAACTGTCAGAGGTGAATCTGCATTGCACATTGCTGTTATGAATCATCAGTTTGGGACCCTTCAGGTACTTGTTGGCTGGCTCAAAGAAAACTGCAAGACAGTTCACTCAATCTCAATCACTCAACCTCAATTCAAACCTATCCCCATATCATTCAACCTCAATTCACTCAATATCAAACTCAACCCTAACCCAAATTATTGTTCATCTAATTCAACCTCAGCTCACTCAATATAA 651 0.3902 MNKKSGDQLNFSAETGNIELLYAAIQDDPSILENIDTIQFVETPLHISASRGHLEFATEIMNLKPSFGMKLNQQGFSPIHLAMQNGQKAMVSKLVGINKDLVRVKGREGLTPLHFACQNGEVELSAEFLTACPDSIEDVTVRGESALHIAVMNHQFGTLQVLVGWLKENCKTVHSISITQPQFKPIPISFNLNSLNIKLNPNPNYCSSNSTSAHSI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3113 216 ProSiteProfiles Ankyrin repeat profile. 108 129 IPR002110 GO:0005515
Psa4g3113 216 SUPERFAMILY Ankyrin repeat 8 169 IPR036770 -
Psa4g3113 216 ProSiteProfiles Ankyrin repeat region circular profile. 108 129 - -
Psa4g3113 216 PANTHER HOMEOBOX PROTEIN WARIAI 13 172 - -
Psa4g3113 216 SMART ANK_2a 142 175 IPR002110 GO:0005515
Psa4g3113 216 SMART ANK_2a 74 103 IPR002110 GO:0005515
Psa4g3113 216 SMART ANK_2a 40 69 IPR002110 GO:0005515
Psa4g3113 216 SMART ANK_2a 108 138 IPR002110 GO:0005515
Psa4g3113 216 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 13 172 - -
Psa4g3113 216 Pfam Ankyrin repeats (3 copies) 94 163 IPR002110 GO:0005515
Psa4g3113 216 Gene3D - 5 181 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3113 Psa-Chr4 254996284 254997275 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3113 8 172 Miscellaneous Gene Families AT4G10720 50.303 9.96e-56 181