Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g3110 ATGAGCACAACCAATCTTGATAAACTTACGGATGCTGCTGAAGCAGGTAATATAGACCTCCTCTATGCAGTAATTCAAACTGATTCGTCCATTTTGGAGAATATAGACTCCAAACAGTTTGTCGAAACTCCTTTGCATATCGCCGCATCTAGGGGCCATATCCAGTTTTCCATTGAGGTTATGAATTTGAAACCTTCATTGGCTTGGAAGCTAAACCCACAAGGCTTCAGCCCCATTCATCTAGCAATGCAAAACGGCCAAAAGAGAACGGTGTCTCGATTTGTTGACATGAATAAAGATCTTGTTAGAATTAAAGGAAGAGAAGGTTTAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAAGTTGACCTTTTAGCAGAATTCATGGCTGTTTGTCCAGATTCTATTGAAGATGTGACTGTGAGAGGTGAAACTGCACTGCATATTGCTGTGAAAAACAACAACTACGAGGCTCTTTATCTTCTTGTTTACTTTCTTAGAGAAAATACCAAGAGAGGTGCAAGGAGGTTAGAATATAAAATACTAAATCGAAAGGATGAGGCTGACAACACCATTTTGCACATTTTGGTGCAAAGGGATTTGGAGCCACAGGTAGAAGAGGCACTTGGATTGATGTTAAATACTAGAATAAATTTGAACGCAAAGAATTTGGAGAACAAAACTGCATTAGACATGGCAGCCAATGTAGATATAAGGAGTATATTGTTGAGTGGTGGAGCAAAATCGAACTCACAAATCAACAATGCTCCAACATATGCACAAAAACTAAGATCAAAGACCACGATTATTGAAAACGTCTTAATTTGGAAACGTAATATTAGGAGTGATATATCAGAGGAGCAACGTAACACTTGGTTGATAGTTGCAACTCTTGTTGCAACTGCCACATATCAATCAGCACTGAGTCCCCCTGGTGGAGTTTATCAGGTTAATGCTAGTGACACTAATGTGAACATTACTGGTGGAGTTTCTAATCCAGGAAATGCTGGGAAATCGGTCTTGTCAAGGAATGAATTCTTTGTGTATTCATTGCTGAATATGCTTTCCTTTTTTGTATCAACTATAGCAGTATTTATTCTGACCCCAAATGGGATAATAGGCGTTCTAGTGTCTGGTCCAGTGGGTTGGTTTGTCCTTTGCTATATATTTTCTATGGTGAGGACATCCCCTACACATGCTAATGCCATTTTTGTTAAGATTGTTTCGTTTTCAATTATGTTTGTGGCATTGCCTTGTTGGGCTATTATAGTGTACTATGGACTTCGACGGATAATGCTAAAGAAGTTGGGTAGATCATAA 1320 0.3879 MSTTNLDKLTDAAEAGNIDLLYAVIQTDSSILENIDSKQFVETPLHIAASRGHIQFSIEVMNLKPSLAWKLNPQGFSPIHLAMQNGQKRTVSRFVDMNKDLVRIKGREGLTPLHFASQIGEVDLLAEFMAVCPDSIEDVTVRGETALHIAVKNNNYEALYLLVYFLRENTKRGARRLEYKILNRKDEADNTILHILVQRDLEPQVEEALGLMLNTRINLNAKNLENKTALDMAANVDIRSILLSGGAKSNSQINNAPTYAQKLRSKTTIIENVLIWKRNIRSDISEEQRNTWLIVATLVATATYQSALSPPGGVYQVNASDTNVNITGGVSNPGNAGKSVLSRNEFFVYSLLNMLSFFVSTIAVFILTPNGIIGVLVSGPVGWFVLCYIFSMVRTSPTHANAIFVKIVSFSIMFVALPCWAIIVYYGLRRIMLKKLGRS* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g3110 439 ProSiteProfiles Ankyrin repeat region circular profile. 142 163 - -
Psa4g3110 439 Pfam Domain of unknown function 286 370 IPR026961 -
Psa4g3110 439 ProSiteProfiles Ankyrin repeat profile. 142 163 IPR002110 GO:0005515
Psa4g3110 439 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 12 425 - -
Psa4g3110 439 PANTHER HOMEOBOX PROTEIN WARIAI 12 425 - -
Psa4g3110 439 SUPERFAMILY Ankyrin repeat 7 250 IPR036770 -
Psa4g3110 439 Gene3D - 3 299 IPR036770 -
Psa4g3110 439 Pfam Ankyrin repeats (3 copies) 103 164 IPR002110 GO:0005515
Psa4g3110 439 SMART ANK_2a 108 138 IPR002110 GO:0005515
Psa4g3110 439 SMART ANK_2a 225 251 IPR002110 GO:0005515
Psa4g3110 439 SMART ANK_2a 142 172 IPR002110 GO:0005515
Psa4g3110 439 SMART ANK_2a 188 221 IPR002110 GO:0005515
Psa4g3110 439 SMART ANK_2a 40 69 IPR002110 GO:0005515
Psa4g3110 439 SMART ANK_2a 74 103 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g3110 Psa-Chr4 254791448 254798243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g3110 8 329 Miscellaneous Gene Families AT4G10720 41.033 1.60e-78 248