Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g3885 ATGAAATCCGATCCTAGATTTGCAAGAAAATTTTCTTACCTTTCTAGGGATTTTCTTAAAAATCCTAGTGTAAAATCAGAGATCCCCACAGTGGTTCCATTGCAACCAAGTTCTACTTTTTCTCCCTCACCATCACATTTTAACACCTTTCTGTATCAAAATCACTACACTCAATTTGAGGAACAAGCTCATAAAGAGACTAGATATGACTCTAGTTTTTCGGATATGGTTCCTTCCTCCGTTAGCTCGTTCTCTATGGTCTCAACTCCAATGTACAAGAAGGCATCAACCAATGGATTCCACGAAAAAAAATTCGATTGGCAAAATCCAATGGCATATGCACCAAATAACAACAAAAAGAAAGTCATGCATGGCCGCCTTAACACTAGCGATGGAATTTGGGACTTATCAAGGAAAAATCTCTTTCAACATGGTGAAACTTCTCAACATCAAGCGGGTCCATCTTTTTCACCATCACTAGTTTACGATGAAAATCCATCTATAGCAATTAAGTCTAATCTTCAAGGAGATATTTCATTCATAGGTGGAATTGAAAACAAATCCCTCGAGAATGACCATGAACTCGTTCACAGCGACAAGAAGCGACGTAGGAGAGTTCACAAGAATGTTGAAACTCAACATAGAGATCTCAATATAATCAAAGGCCAATGGACTGAAAACGAGGACAGGATTCTTGTTCAATTGGTGGATCAATTTGGAACTAGAGAATGGTCTCATATTGCTAAGTTTCTAAATGGCAGGATCGGGAAACAATGCAGGGAAAGATGGAATAATCATCTTCGACCCGATATTAAGAAGGACTCATGGAGCCAAGAGGAGGACAAAATACTAATTGAAGCTCACAAGAAACTTGGGAACAAGTGGTCTGAAATTTCAAAGAAATTGCCCGGGCGCACAGACAATACTATCAAGAACCACTGGAACACCACTAAGCGCAGCCAAATTGCAAAGAGGAGGCGTAACAGGCGTAAAAGTTTGAAGCTAAATCCACTTCAAAAGTATATCATTGAAGTGGAAGCCGCAAAGGAAGCTAAAAATAAGCAGTTGGAGAATTCCATTAGCATGATGACTATTGGGAATCAACTAAGCTTCAACAATTTCAATGGAAGATCTGAAGGTGGTTTCCGCTCTCAAGGTTTTGCTACTCCAAGAGGTGAAATTGAAGGCTATGTTCCAATGATAGTAAATGGTGGTGATGATGGAATAGGAAATGGATCAGGAGCTATGAATTATGATTATGGATCGTATGCAATGGAGTTTTTTCCCGAGGTTCCTTTGAAGCAGGAAATTGATCTCATGAAGATGTTCTATAAGAACCCTTAA 1344 0.3914 MKSDPRFARKFSYLSRDFLKNPSVKSEIPTVVPLQPSSTFSPSPSHFNTFLYQNHYTQFEEQAHKETRYDSSFSDMVPSSVSSFSMVSTPMYKKASTNGFHEKKFDWQNPMAYAPNNNKKKVMHGRLNTSDGIWDLSRKNLFQHGETSQHQAGPSFSPSLVYDENPSIAIKSNLQGDISFIGGIENKSLENDHELVHSDKKRRRRVHKNVETQHRDLNIIKGQWTENEDRILVQLVDQFGTREWSHIAKFLNGRIGKQCRERWNNHLRPDIKKDSWSQEEDKILIEAHKKLGNKWSEISKKLPGRTDNTIKNHWNTTKRSQIAKRRRNRRKSLKLNPLQKYIIEVEAAKEAKNKQLENSISMMTIGNQLSFNNFNGRSEGGFRSQGFATPRGEIEGYVPMIVNGGDDGIGNGSGAMNYDYGSYAMEFFPEVPLKQEIDLMKMFYKNP* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g3885 447 PANTHER MYB DOMAIN PROTEIN 100-RELATED 146 360 - -
Psa3g3885 447 Pfam Myb-like DNA-binding domain 224 282 - -
Psa3g3885 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 268 322 IPR017930 -
Psa3g3885 447 CDD SANT 275 318 IPR001005 -
Psa3g3885 447 Coils Coil 338 358 - -
Psa3g3885 447 PANTHER MYB PROTEIN-RELATED 146 360 - -
Psa3g3885 447 ProSiteProfiles Myb-like domain profile. 268 318 IPR001005 -
Psa3g3885 447 Gene3D - 220 272 - -
Psa3g3885 447 ProSiteProfiles Myb-like domain profile. 216 267 IPR001005 -
Psa3g3885 447 CDD SANT 224 267 IPR001005 -
Psa3g3885 447 Gene3D - 275 318 - -
Psa3g3885 447 SMART sant 220 269 IPR001005 -
Psa3g3885 447 SMART sant 272 320 IPR001005 -
Psa3g3885 447 SUPERFAMILY Homeodomain-like 218 314 IPR009057 -
Psa3g3885 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 267 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g3885 Psa-Chr3 356058945 356060907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g3885 219 342 MYB Transcription Factor Family AT4G18770 65.323 1.64e-54 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g3885 Myb_DNA-bind_6 4.6e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g3885 3 356058945 356060907 Psa3g3885 3 356058945 356060907 ECH
Psa7g0212 7 14954985 14957058 Psa3g3885 3 356058945 356060907 ECH