Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci6g1320 ATGTCGCATTCTGGGAAGCCCATTTCCGAGCTAGGACTCGATGCTCTGAACGACCGATTCCACGGTTCCTTAAGCTGTGAACCTAACAAGCCGGATTTTCGAGAACTCGACTTGGGCTCGCCGGTTTCGCCACTGCGGACTCGTCACAGTCACAGTGTGCCCACTGCTACCAGTAGTAGTTCGAGTTCATCTGGATCGATCTCTGGACGAAACGGGTACAAACCGGTCACAAAGCGATCCGATTATGATCCGAATAACCACTCAGGCGAGCTCTCCGGCTCCGGCGAGAACAGCCCGACCGCCGCAGGGAATGCCAGGAACTTAAAAGTTTCCCAAGCAAGATCAGATTTCATGACGACCCAATCGTTAATATACTCGGGTCAAGGCTCAGCCGTGAATTCGCCGCCGCCGAATTTTCTTCCTACAGGCAACATCTGTCCGTCCGGCAAGATTCTGAAGACCGCCGCGGCGGTCAGTCGGAGCTCCAGAACGGACGTTTTGGGTTCTGGGATAGGAAATTACGGCCATGGAAGCATAATGCGGGGCGGTGCGACTTCCAAAGGCATTGCAGGAGGGATGACCGGTTCAGCGAATGCGAGGGCGAGCGGTGGTGGTGCTCTCACTGACTCAGTTAAGCGAGCGGTGGTGACTGTGGATCCAGAAGAGGTGAAGAGAGCAGGGAACGAGCAGTACAAGAGAGGTCACTTCGCTGAGGCTCTGAGTCTATACGATCGAGCAATTGCATTATCCCCTGCTAACGCAGCCTACCGGGCCAACCGTGCAGCCGCATTGACGGGCTTGGGACGGTTGGCTGAGGCTGTGAGGGAGTGTGAGGAGGCTGTGAAGTTAGATCCCAATTATGGGAGGGCACAACTGCGTTTGGCTTCTCTTTTTCTACGGCTAGGACAAGTTGAGAACGCCAGGAAACATCTCTCCTGTCCTGGGCTGCCACCTGATCCTTCTGAGTTGCAGAAATTGCAATTAGTGGAGAAGCATATTGGGAAATGTACTGATTCCCGGAAGATAGGTGATTGGAAAAGTGTACTCACGGAAATTGATGCTGCCATTTCTTCTGGAGCAGACTCTTCTCCTGAGCTCTTTATGTGTAGAGCTGAGGCCCTTTTGAAACTCCACCGAGTTGATGATGCTGAATCAAGTCTATTAAACAATCCCAAATTGGAACCACATACTAACTCCTCTTCACAAGCAAGATTTTTTGGGATCCTTTCTGAAGCTTACTCCTTCTTTGTGAGAGCTCAGATTGAGATGGCTCTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGTCAGATTGATCCCCGAAACATTGAAGTTGCTGTTTTGCTAAAAAATGTAAGGATGGTGGCGAGAGCTCGAGTGCACGGCAATGATCTTTTCAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGCTGGACCCTTCAAACTCTGTCCTCTACTGCAATAGAGCAGCCTGCTGGTTTAAGCTTGGGCAATGGGAACAATCAATTGAAGATTGCAATCAAGCTTTACATTTCCAACCTAATTACACAAAAGCCCTTCTACGCAGAGCTGCATCTAATAGCAAGTTAGAAAGGTGGGCAGAGGCTGTCAAAGATTATGAGATCTTGCGGAGAGATCTTCCAGATGACAGTGAAGTAGCTGAAGCTTTGTTTCATGCAGTGTTGGCATTAAAGAAATCTCTTGGAGAGGAAGTGCATGATTTGAAATTTGGTGGTGAGGTGGAAGGAGTATCAGGACTTGAGCAATTTAGAGCAGCAATAGCATTACCAGGTGTTTCTGTGGTCCATTTTGAAATTTCATCTAACCCACAATGCAAGCAAATCTCACCTTTTATGGGTACATTATGTGGCCGCTATCCTTCTATTAACTTCCTCAAGGTGGATATTCAAGAATACCCAACAGTTGCAACAGCTGAAAGCATTAGAATTGTGCCAACATTCAAGATCTACAAGAATGGCTGTCGTGTGAAGGAAATTGTATGCCCTAGTCGCGACATGTTGGAACACTCTGTGAGGCATTACAGCTCTTAA 2079 0.4853 MSHSGKPISELGLDALNDRFHGSLSCEPNKPDFRELDLGSPVSPLRTRHSHSVPTATSSSSSSSGSISGRNGYKPVTKRSDYDPNNHSGELSGSGENSPTAAGNARNLKVSQARSDFMTTQSLIYSGQGSAVNSPPPNFLPTGNICPSGKILKTAAAVSRSSRTDVLGSGIGNYGHGSIMRGGATSKGIAGGMTGSANARASGGGALTDSVKRAVVTVDPEEVKRAGNEQYKRGHFAEALSLYDRAIALSPANAAYRANRAAALTGLGRLAEAVRECEEAVKLDPNYGRAQLRLASLFLRLGQVENARKHLSCPGLPPDPSELQKLQLVEKHIGKCTDSRKIGDWKSVLTEIDAAISSGADSSPELFMCRAEALLKLHRVDDAESSLLNNPKLEPHTNSSSQARFFGILSEAYSFFVRAQIEMALGRFENAVTAAEKAGQIDPRNIEVAVLLKNVRMVARARVHGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEQSIEDCNQALHFQPNYTKALLRRAASNSKLERWAEAVKDYEILRRDLPDDSEVAEALFHAVLALKKSLGEEVHDLKFGGEVEGVSGLEQFRAAIALPGVSVVHFEISSNPQCKQISPFMGTLCGRYPSINFLKVDIQEYPTVATAESIRIVPTFKIYKNGCRVKEIVCPSRDMLEHSVRHYSS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci6g1320 692 ProSiteProfiles TPR repeat profile. 412 445 IPR019734 GO:0005515
Prci6g1320 692 SUPERFAMILY TPR-like 339 455 IPR011990 GO:0005515
Prci6g1320 692 CDD TRX_family 597 684 - -
Prci6g1320 692 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Prci6g1320 692 ProSiteProfiles TPR repeat profile. 492 525 IPR019734 GO:0005515
Prci6g1320 692 Gene3D Tetratricopeptide repeat domain 218 577 IPR011990 GO:0005515
Prci6g1320 692 MobiDBLite consensus disorder prediction 19 105 - -
Prci6g1320 692 FunFam TPR repeat-containing thioredoxin TTL4 584 691 - -
Prci6g1320 692 MobiDBLite consensus disorder prediction 45 73 - -
Prci6g1320 692 MobiDBLite consensus disorder prediction 86 105 - -
Prci6g1320 692 Pfam Thioredoxin 598 682 IPR013766 -
Prci6g1320 692 Pfam Tetratricopeptide repeat 414 444 IPR019734 GO:0005515
Prci6g1320 692 SMART tpr_5 526 559 IPR019734 GO:0005515
Prci6g1320 692 SMART tpr_5 459 491 IPR019734 GO:0005515
Prci6g1320 692 SMART tpr_5 254 287 IPR019734 GO:0005515
Prci6g1320 692 SMART tpr_5 412 445 IPR019734 GO:0005515
Prci6g1320 692 SMART tpr_5 220 253 IPR019734 GO:0005515
Prci6g1320 692 SMART tpr_5 492 525 IPR019734 GO:0005515
Prci6g1320 692 SMART tpr_5 364 397 IPR019734 GO:0005515
Prci6g1320 692 SUPERFAMILY TPR-like 464 574 IPR011990 GO:0005515
Prci6g1320 692 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 23 689 IPR044534 -
Prci6g1320 692 Pfam Tetratricopeptide repeat 226 286 - -
Prci6g1320 692 Pfam Tetratricopeptide repeat 494 525 IPR001440 GO:0005515
Prci6g1320 692 SUPERFAMILY TPR-like 221 311 IPR011990 GO:0005515
Prci6g1320 692 SUPERFAMILY Thioredoxin-like 595 678 IPR036249 -
Prci6g1320 692 Gene3D Glutaredoxin 586 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci6g1320 Prci-Chr6 9617951 9622318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci6g1320 457 528 U-box Gene Family AT3G07370 38.889 4.85e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g1800 7 32988630 32992975 Prci6g1320 6 9617951 9622318 CCT
Prci6g1320 6 9617951 9622318 Prci7g2066 7 34681303 34685004 CCT
Prci6g1320 6 9617951 9622318 Prci6g1320 6 9617951 9622318 ECH