Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2361 ATGATTGGAGGGAAAGATCTTCCGAATGGTCTTGACTCTGACGGGGAGAACTCTCGGAGCAAGCTTTCAAAACCCAATTTTGACCGTGCCGAGGAGAACCCTGAGGACAAATTAGGTTATCCAGAAAAGGGTGCGTATTTTCTGAAGGATTTGCAGGAGGGTGGGGATGGAATTCTATTGAAACCCTCTAAAGTTGGGATTTCGGGCTTACAAGAGCTAACCCTCAGCTACCTCTGTGATAAGGAGATTCCTGGTAAAAGCTTGCTGAGTTCCTTGGAAAAGATCAGTTGCAAAGGTAAAGAAGTTATCGTCTTGGAGAATTCGAATCAGGACGAGAAATGGGTCGAACGGGATTTTCTGAATTTGAGCGAAACCAGGGAGAATTCTTCGAAGCGATCGGTTGAAGAAGGGGTTGAAAGGGAAAATAAGGACAAGAAGCCGAAGCTGGAGACGCTTAATCTCTCCCTTGCCTTGCCTGATGTCTCTCTTTCTCTCACGGCGTCAAACGCCCTGCAAAACGGTGATCAGCCGGTGAGGCCAAAGCCTAGCAAACCGACAGCGACTGCGTATTCAAACGATTATGCTGCCGCTTCTCTATCGTACTCGTATTCTCATCCCTTCTCGCACAATCCAAGCTGCTCACTTACCCGTAATTCTACAGATTTTGATTATTCAGTTAGCAAAGAAGATCATATCTGGAACTGCGGGGAAGGGACAAATGGATCAGTTCATAGTCGGTTCAAGCCAATAGGAGATGGGGTTGCCTTGTCTAATCATGGTGGTGGTGGGTTTAATTCAATCATGCAGGGTAATAATAGTCAGTATAAAACTACAAGTTCAGATAACCATTCTTTTTTCCCGTCGGAATTGCCTGCCAGGCCAAGATTTGAAGCTCACTCAGGGGACTCAAGAGGAAGGAATTCTGAGAATCTGAGAGCATTGGAAGGTTTAGATTGTGGGAAAGTAAGGAGGCTTTCTAGACCAGAGAAAATTCTCAGAGAGATCGTGTCGGAGTCTGTCCCAACTATGGCTGTGACGTTTCAGGAGCTTACTGATGAAGTGATTGCATCGACTAAGGAATACTTAAAGAAACTCATTGAGATGCCCGAGAAGAAAGAGGAATTGGTCAGCCTCCAAAATCACCTTGAGCGGAGATCTGACCTTACCAAGGAGACTCTTTTGAAGTGCCGCAAGGAGCAACTTGAGATTTTAGTTGCTGTCAAGATGGGGCTTGCAAGCTTCTTATCTGGCAAAGTCCACTTCTCTGAGATGTTAGAGATTTTCTTGCAAATGAGATGTAGAAATATGAACTGTAGGAACTTGCTGCCTGTTGATGACTGTGACTGCAAGATTTGTTCCGGAAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTCTGTCTGAATTTTGATTGTGCAAGCAACACTTGCAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGTGGCATTAAGAGGAATCTTATCAAACCTGGGCCTAGCTTAAAAGGGCCTTCAGGGACCACTGAGATGCAGTTTCATTGCAGTGGTTGTGGACATGCTTCAGAAATGTTTGGCTTTGTTAGAGATGTGTTCATATGTTGTGCAAAGGATTGGGGTCTTGAAACCCTGGTGAAAGAGCTTGACTGTGTAAGGAGGATTTTCAAAGGAAGTGAAGATCGCAAAGGGAAGGAATTGCGTGTCAAAACTGATGACATGCTCTTTCAGCTTCAAACCAAAATGGTGTCTCCTTTAGATGCCTGCAATTACATCCTACAATTTTTCAACTATGCAGATGGCGCGTCAGACTTTCCTTCTTCTGGTATATCTTCAAAGGATTTGTCAGCATCTCAAGCTAATCTTGGGAAGGAAGCAACATCTCTTTCACAATCTAATTCTCTAATGTCAAAATATACTTATAATTCAAGCTTTTCGAGGTCACAATGTGATGTTCTGTCAAATGATCTTCATCAGAAAGATCTCAAAGCTTCCATCTTAAGTGAATTGAAAAGTGAGAGTGATTTCCAGTTGGGAGCTCTGTTAAGAAAAGGTGGTCTTGATAGCTTGGAGAGCATTGTGAGGATAAAGGAAGCAGAAGCCAGAATGTTCCAAAGCAAGGCAGATGAAGCCCGGAGAGAAGCTGAAGGTTTCCAGAGGATGATAAGGACAAAAACGGCACAGATGGAAGAAGAGTACGCAGAAAGGCTCGCCAAGCTCTCTCTGCAAGAGACTGAGGAAACTCGGAGGAAGAAATTGGAGGAATTGAAAGTCTTGGAAAGTTCTCATTGTGATTACTTCAAAATGAAAATGAGAATGCAAGCTGAGATTGCTGGTTTGCTGGAGAGGATGGAGGCAACAAAGCAGCAATGGGTTTAA 2388 0.4405 MIGGKDLPNGLDSDGENSRSKLSKPNFDRAEENPEDKLGYPEKGAYFLKDLQEGGDGILLKPSKVGISGLQELTLSYLCDKEIPGKSLLSSLEKISCKGKEVIVLENSNQDEKWVERDFLNLSETRENSSKRSVEEGVERENKDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRPKPSKPTATAYSNDYAAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKEDHIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGGFNSIMQGNNSQYKTTSSDNHSFFPSELPARPRFEAHSGDSRGRNSENLRALEGLDCGKVRRLSRPEKILREIVSESVPTMAVTFQELTDEVIASTKEYLKKLIEMPEKKEELVSLQNHLERRSDLTKETLLKCRKEQLEILVAVKMGLASFLSGKVHFSEMLEIFLQMRCRNMNCRNLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWVGCDVCSHWCHAACGIKRNLIKPGPSLKGPSGTTEMQFHCSGCGHASEMFGFVRDVFICCAKDWGLETLVKELDCVRRIFKGSEDRKGKELRVKTDDMLFQLQTKMVSPLDACNYILQFFNYADGASDFPSSGISSKDLSASQANLGKEATSLSQSNSLMSKYTYNSSFSRSQCDVLSNDLHQKDLKASILSELKSESDFQLGALLRKGGLDSLESIVRIKEAEARMFQSKADEARREAEGFQRMIRTKTAQMEEEYAERLAKLSLQETEETRRKKLEELKVLESSHCDYFKMKMRMQAEIAGLLERMEATKQQWV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2361 795 Pfam PHD - plant homeodomain finger protein 433 557 IPR032881 -
Prci5g2361 795 Coils Coil 697 731 - -
Prci5g2361 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 385 400 IPR004082 -
Prci5g2361 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 543 562 IPR004082 -
Prci5g2361 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 424 445 IPR004082 -
Prci5g2361 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 470 490 IPR004082 -
Prci5g2361 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 691 711 IPR004082 -
Prci5g2361 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 368 IPR004082 -
Prci5g2361 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 752 IPR004082 -
Prci5g2361 795 Coils Coil 745 765 - -
Prci5g2361 795 CDD PHD_OBE1_like 463 522 IPR047578 -
Prci5g2361 795 Coils Coil 773 793 - -
Prci5g2361 795 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 106 794 IPR004082 -
Prci5g2361 795 MobiDBLite consensus disorder prediction 169 189 - -
Prci5g2361 795 Pfam Coiled-coil region of Oberon 656 784 IPR032535 -
Prci5g2361 795 MobiDBLite consensus disorder prediction 1 41 - -
Prci5g2361 795 MobiDBLite consensus disorder prediction 17 41 - -
Prci5g2361 795 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2361 Prci-Chr5 40442848 40447075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2361 433 637 PHD Gene Family AT5G57380 24.878 3.13e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g2361 5 40442848 40447075 Prci5g2361 5 40442848 40447075 ECH