Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2316 ATGGCTGCTTTGCAGAGAGTGACACAGTCAAGCATGACCACTAGTGCAAGCAGCTATGGCACCTGCAAAGGTGGTGGTGCTGCAGCCAGTGAGAAGGCGGTTCCTGATAAGTTCCCAGCTGGTCTGAGGGTTCTCGTTGTGGACGATGACATCACTACTCTGAAAATCATTGAACAAATGTCTCTTAAGTGTCATTATCGCGTCACCACGTGTTCTGAGGCTCCTGTTGCTTTAAATCTTCTACGAGAAAAGAAAGGCTGTTTTGATGTAGTACTGAGTGATGTTTATATGCCTGACATGGATGGGTATAAACTCCTAGAACATGTTGGGCTGGAGATGGATCTTCCTGTTATCATGATGTCTGCTGACGGCAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATTAAGCCTGTTCGTGAGGAGGAATTGAGGAATATATGGCAGCACGTTGTTAGGAAGATGTGGAATGAAAATAAAGAACATGAAAATTCTGGCAGCTTGGAAGATAATGATAGGAATAAACGAGGAAATGATGATACTGAATATGCTTCATCTGTAATTGATGTGGCAGAAGTAGTTAAAGTGCCAAAAAAGAGGATCAGTTCAAAAGAAGATGATGATGGTGAGCTGGAGAATGATGATCCATCCACATCTAAGAAACCCCGTGTGGTCTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAACCAACTCGGGCTTGACAAGGCTGTACCAAAGAGAATTCTTGAACTGATGAACGTCCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATCTGCAGAAATTTAGGCTTTATTTGAAGAGAATAAGTGGAGTGGCACAGCAACAGAGTGGGATTCCAAACACAGTCTCTGGGTCTATGGAATCCAGGCTAGGAGGACTTGGAAGGCTAGACATCCAAGCTCTGGCTGCTGCTGGCCAAGTTCCTCCTCAAACACTAGCAGCCTTTCATGCAGAACTCTTAGGTCGTCCAGCCACTAACTTGGTGCCGACAGTGGACCAGACTGCTCTTCTGCAAGCTTCCATGCAAGGCCCCAAGCATACCCCTGCGGAACATGCTGTGGCATATGGTCAGCCACTTGTAAAATGTCCTACCAACGTTGTCAAGAATTTTCCTCAATCCATCCTTACTGCGGATGATGCATCTTCAGGCTATGGAGCATGGCCACCATCTGATACAATTGGTTCGATGGGACCCAATAGTAATCTTGGAAGGTTGAGTGTTCAACATAATAACATGCTGATGGATATACTGCAGCACCAGCAAAGGCAGCAGTTCCAGCAAATACAGCAGCATAAGCTGCAGCAGCAATCGCTGATGCATGATCAAAGTCGTTCAATCAATGTCCAACCATCTTGCTTGGTGTCTCCCTCTCAAACTTCAGGAACTTTCCAGGTTAATGGTCCTGCATCTGTTAACCAGAATTCCAGTTTGGTTAGGAATGCCCTTATGGATTATAGTCTCCTTGCACCCCAATCGAATCATCCTTCATTAAATATTGCTCAATTTCCTGGTGGGGACACCAAAGCTAAAGGTTTTCTTTGTGGATATGTGGCTCCAGGCTCCATTTTGCATCCAACGTCACCGCATTCAATGAGTGCTAACAATAGTAATATTCAACAGCTTCACAACTCATCTTTGACATTCGGTACTGTGAGACCTTTGCCAAATCTTTCATCTAATGTGTCTGATACACAAGTTCCGTATGGTGGTACGAAATCTGGTGATGCAATTGATCAAGCACATGTAAGGAATCTTGGATTTGTTGGCCAAGGTAGTAGTATTCCAAGTAGGTTTGCTGCTCATGAAATTGAATCATCTGTCAGTGACTTAAGTGGGGGAAAAATCCCTCTAGATAGCAATGGTAACACAGTGAAGCAGGAGCCAATTATGGATTTGATGGATAACTCTAAAGTGGGCGCCCCAGTCTTACAAAGATATCCATCCGATCCCATGAATGTGTTCACTGAATAG 2022 0.4436 MAALQRVTQSSMTTSASSYGTCKGGGAAASEKAVPDKFPAGLRVLVVDDDITTLKIIEQMSLKCHYRVTTCSEAPVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRNKRGNDDTEYASSVIDVAEVVKVPKKRISSKEDDDGELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQSGIPNTVSGSMESRLGGLGRLDIQALAAAGQVPPQTLAAFHAELLGRPATNLVPTVDQTALLQASMQGPKHTPAEHAVAYGQPLVKCPTNVVKNFPQSILTADDASSGYGAWPPSDTIGSMGPNSNLGRLSVQHNNMLMDILQHQQRQQFQQIQQHKLQQQSLMHDQSRSINVQPSCLVSPSQTSGTFQVNGPASVNQNSSLVRNALMDYSLLAPQSNHPSLNIAQFPGGDTKAKGFLCGYVAPGSILHPTSPHSMSANNSNIQQLHNSSLTFGTVRPLPNLSSNVSDTQVPYGGTKSGDAIDQAHVRNLGFVGQGSSIPSRFAAHEIESSVSDLSGGKIPLDSNGNTVKQEPIMDLMDNSKVGAPVLQRYPSDPMNVFTE 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2316 673 CDD REC_typeB_ARR-like 44 158 - -
Prci5g2316 673 Gene3D - 42 216 - -
Prci5g2316 673 MobiDBLite consensus disorder prediction 205 226 - -
Prci5g2316 673 Pfam Response regulator receiver domain 44 153 IPR001789 GO:0000160
Prci5g2316 673 Gene3D - 223 286 - -
Prci5g2316 673 SUPERFAMILY CheY-like 41 166 IPR011006 -
Prci5g2316 673 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Prci5g2316 673 FunFam Two-component response regulator 223 286 - -
Prci5g2316 673 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Prci5g2316 673 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 283 IPR017930 -
Prci5g2316 673 ProSiteProfiles Response regulatory domain profile. 43 158 IPR001789 GO:0000160
Prci5g2316 673 FunFam Two-component response regulator 42 179 - -
Prci5g2316 673 Pfam Myb-like DNA-binding domain 229 277 IPR001005 -
Prci5g2316 673 MobiDBLite consensus disorder prediction 167 188 - -
Prci5g2316 673 SMART REC_2 42 154 IPR001789 GO:0000160
Prci5g2316 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 378 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2316 Prci-Chr5 40126900 40132842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2316 76 341 Response Regulator Gene Family AT3G16857 54.895 2.19e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Prci5g2316 Response_reg 5.1e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g2316 5 40126900 40132842 Prci5g2316 5 40126900 40132842 ECH