Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci2g2079 ATGGTTTTGTCAGGAACGCTAAGGAAAGTTTTCCGACGTGCCCACAAAGAGAAATGCCTTCCCGGCGGTGAGCTTGACTTGGAACCTGTGATTCCGATGCATTTCCGGTGCCCGGTGAGCCTAGAAATGATGAAAGATCCGGTGACATTGTGCACCGGAATCACCTACGACAGGGACAACATCGAGAGGTGGATTGAATCTGGGAACAACACCTGCCCCGTGACCAAGCAGGTTCTTTCGAGCACTCAAATGATCCCAAATCACGCCATTCGAAGAATGATCCAGGACTGGTGCGTCGAACACCAGTCTCACGGGATTGAAAGGATCCCCACTCCGAGGATCCCCGTTGCACCGTACGAGGTTTCGGAGACTTGCTCGAGGATAATCGTCGCCGCTCGTAATGGGGATATCAAAAGGTGCCAAGAATTGCTGGGGAAGATTAAGAATTGGGGTAAAGAGAGTGAGAGGAACAAGAGGTGTATAGTGGAAAACGGTGCTTGTGCAGTGTTAGCCTCTGCTTTTGATTCCTTCTCACGTGGTTCCATCGAGGAAAACGAGGAAGTTCTAGAGATGATATTGGAGGTACTCCCATGGATGATGAATCCATCACGAGAGGATGCAAGATCGAAATTGAGGTCTGAAGCATCTTTGAATTGCTTGGTTTGGTTTCTGAATGGGAACGACCTTTCAGCGAGGCAAAATGCAGCCATGGTGCTCAAGGAAATGCCTGTGAGAACTCTGGCTAAAACTGAAGGCATAATTGAAGCTTTGGTGAAGATGATTAGAGAGCCTATAGGACCTAATGCAACAAAAGCAAGCTTGACAAAGATTTTCCAGTTGGTTTCCTCATCTGATGACAACGAGAGAATCTCACAGAGATTTGTGGAATTGGGTTTGGTTTCTTTGTTGCTGGAGGCCATTGTGGATGCAGACAAAAGTCTATGTGAGAAAGCTATGGGTGTGTTGGATTGTATCTGTGATTGTAAAGAAGGGAGGGAATCAGCCATGGCTAATTCTCTAACCTTGCCTCTTGCAATCAAGAAGATCTTAAGAGTGTCAGCGCTGGCCACTGAGTTTTCAGTGTCCATTCTTTGGAAGCTCTGTGATAAGGAAGATGAAGAGGTTCTTGTTGAGGCAGTTCAACTTGGAGCTTTTCAGAAGCTCTTGGTTTTGTTGCAGGTGGGCTGTGAAGAAAGCATGAAGGAGAAGGTCACTGAATTGTTGAAACTGTTGAATGCTTATAGAAGCAAAGCAGAATGTGTGGATTCATCCTTGGATCTCAAGTACCTTAAGAAGCCCTTCTAA 1305 0.4636 MVLSGTLRKVFRRAHKEKCLPGGELDLEPVIPMHFRCPVSLEMMKDPVTLCTGITYDRDNIERWIESGNNTCPVTKQVLSSTQMIPNHAIRRMIQDWCVEHQSHGIERIPTPRIPVAPYEVSETCSRIIVAARNGDIKRCQELLGKIKNWGKESERNKRCIVENGACAVLASAFDSFSRGSIEENEEVLEMILEVLPWMMNPSREDARSKLRSEASLNCLVWFLNGNDLSARQNAAMVLKEMPVRTLAKTEGIIEALVKMIREPIGPNATKASLTKIFQLVSSSDDNERISQRFVELGLVSLLLEAIVDADKSLCEKAMGVLDCICDCKEGRESAMANSLTLPLAIKKILRVSALATEFSVSILWKLCDKEDEEVLVEAVQLGAFQKLLVLLQVGCEESMKEKVTELLKLLNAYRSKAECVDSSLDLKYLKKPF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci2g2079 434 CDD RING-Ubox_PUB 32 84 IPR045210 -
Prci2g2079 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 108 IPR013083 -
Prci2g2079 434 Gene3D - 122 243 IPR011989 -
Prci2g2079 434 PANTHER WDSAM1 PROTEIN 28 421 IPR045185 GO:0061630
Prci2g2079 434 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Prci2g2079 434 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Prci2g2079 434 Gene3D - 244 425 IPR011989 -
Prci2g2079 434 SUPERFAMILY RING/U-box 30 107 - -
Prci2g2079 434 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Prci2g2079 434 SUPERFAMILY ARM repeat 126 413 IPR016024 -
Prci2g2079 434 FunFam RING-type E3 ubiquitin transferase 31 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci2g2079 Prci-Chr2 15892378 15894007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci2g2079 21 434 U-box Gene Family AT5G37490 47.031 5.95e-121 357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g2079 2 15892378 15894007 Prci2g2079 2 15892378 15894007 CCT
Prci2g2079 2 15892378 15894007 Prci2g2079 2 15892378 15894007 ECH