Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01836 ATGAATACCAACTTCCCAGTTCTCTCATTTCACTGCAACAACTGGGATTTAACCTTTTCCTCTATTAGCTTATCATTAAAGACAAAACATTTCCAACACCCTCCTCTGTGCACTATTCCTCTACCTTTATGCTTACACAAGCACACAATTAACAAAACGGAGCCTGTGGTCCACACCCTTCTTTTCTGCCTTTCTGCTTCCTATAAACTCCCTCTTTTGCTCCAAAAAGTTCTGCCTCACCAACAACCTTACGTCCTCCTTCTCCATTCACCACCCTTTTGCACAATGGAGGCCAGGACTGTGGAGAGGAAGAGATCACTCTTTGAGAGGGTGAGAAAGAATGTGGAGGAGGAAGTGGAAAATGAAGTGGAAGAGGAGGATGAAAGTGGTGCTAGTCTCACAGAAGATGAGAAAAAGAGAGGGCTTAGTAGCAATAGTGGTGGCGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGGGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGTTTCACTCCAAAGCACCTGCTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAATGAACGGCGCCGGAAAAGCAACCCTGAAGCTGGCAGCGATGGCAGCAGCCACAGCAGCAAAGGCCATCACCACCCTAAGGAAACAACACACTGCAGGCTTGCTGATGAGAGGGGGAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 870 0.4954 MNTNFPVLSFHCNNWDLTFSSISLSLKTKHFQHPPLCTIPLPLCLHKHTINKTEPVVHTLLFCLSASYKLPLLLQKVLPHQQPYVLLLHSPPFCTMEARTVERKRSLFERVRKNVEEEVENEVEEEDESGASLTEDEKKRGLSSNSGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPAVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAGSDGSSHSSKGHHHPKETTHCRLADERGRIQMNLPGSSGYKSFNIR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01836 289 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Phco9g01836 289 Gene3D - 156 226 IPR036893 GO:0003677|GO:0005634
Phco9g01836 289 Coils Coil 98 125 - -
Phco9g01836 289 MobiDBLite consensus disorder prediction 229 289 - -
Phco9g01836 289 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 133 252 IPR044817 GO:0003677
Phco9g01836 289 FunFam Squamosa promoter-binding-like protein 14 157 226 - -
Phco9g01836 289 MobiDBLite consensus disorder prediction 116 166 - -
Phco9g01836 289 MobiDBLite consensus disorder prediction 235 270 - -
Phco9g01836 289 SUPERFAMILY SBT domain 163 243 IPR036893 GO:0003677|GO:0005634
Phco9g01836 289 Pfam SBP domain 165 238 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01836 Phco-Chr9 42734300 42735606 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco9g01836 SBP 3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00429 11 2866646 2868202 Phco9g01836 9 42734300 42735606 ECH
Phco9g01836 9 42734300 42735606 Phco11g00429 11 2866646 2868202 ECH
Phco9g01836 9 42734300 42735606 Phco9g01836 9 42734300 42735606 ECH